align.ibd.var | align ibd.var object with relative pairs within pairs.frame... |
chibar3.w | Compute mixture proportions, w, for mixture chi-square... |
create.ibd.dat | Create an ibd.dat object |
create.pairs.frame | create a data frame for relative pairs |
exact.ibd.var | create an ibd.var object |
Ginv | Compute Generalized Inverse of Input Matrix |
ibd.df.merlin | Create and return a data.frame with ibd data from merlin |
ibd.moments | calculate moments (mean, variance) for simulated ibd vectors |
ibdreg | Regression Methods to Test for Linkage With Covariates |
linkage.all | Linkage test statistics for ALL relative pairs |
linkage.tests | Linkage tests for relative pair groups |
lsConstrain.fit | Minimize Inequality Constrained Mahalanobis Distance |
mergeIBD | Merge ibd and covariate data |
minpRows | find the rows of a data frame with the minimum pvalue |
pairSum | Combine person-specific covariates to pair-specific |
pchibar | cumulative probability of a chibar distribution |
plot.ibdreg | plot an ibdreg object |
plot.ibdreg.unexpect | Plot unconstrained and constrained linkage tests to indicate... |
plot.linkage.all | Plot a linkage.all object |
plot.linkage.tests | Plot a linkage.tests object |
plotpval | Plot the -log10 of pvalues |
printBanner | Print a nice banner |
print.ibdreg | print and ibdreg object |
print.ibd.var | print an ibd.var object |
print.linkage.all | Print or summarize a linkage.all object |
print.linkage.tests | Print a linkage.tests object |
resources | track system resources |
sim.ibd.setup | set-up functions for sim.mark.prop |
sim.ibd.var | Create an ibd.var object via simulations using gene-dropping |
sim.mark.prop | Simulate Marker Propagation |
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