plot.ibdreg.unexpect: Plot unconstrained and constrained linkage tests to indicate areas of unexpected allele sharing

Description

Plot the -log10(pvalue) of the unconstrained and constrained linkage tests to indicate areas of unexpected allele sharing

Usage

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 ## S3 method for class 'ibdreg.unexpect'
plot(x, status.method="AA", ...)

Arguments

x

an ibdreg object

status.method

Character string indicating which affection status for relative pairs ("AA", "AU", or "UU") is to be examined for unexpected IBD sharing. Character string indicating which relative pairs to display linkage tests for: "AA", "AU", or "UU". These correspond to: Affected-Affected, Affected-Unaffected, and Unaffected-Unaffected, respectively.

...

extra parameters for the plot method. This method looks for a 'title' parameter.

Value

nothing is returned

See Also

plot.ibdreg, ibdreg


Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

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