API for ibdsim2
Simulation of Chromosomal Regions Shared by Family Members
| Global functions | |
|---|---|
| .comb2 | Source code |
| .convertPos1 | Source code |
| .getAlleles | Source code |
| .getLen | Source code |
| .plotSegDist | Source code |
| .sampleInt | Source code |
| .sortDouble | Source code |
| `%||%` | Source code |
| `[.genomeMap` | Source code |
| addRect | Source code |
| addStates | Source code |
| alleleFlow | Source code |
| build_allelemat_C | Source code |
| chromMap | Source code |
| convertPos | Man page Source code |
| convert_pos_C | Source code |
| customMap | Man page Source code |
| distributeFounderAlleles | Source code |
| estimateCoeffs | Man page |
| estimateIdentity | Man page Source code |
| estimateInbreeding | Man page Source code |
| estimateKappa | Man page Source code |
| estimateKinship | Man page Source code |
| estimateTwoLocusIdentity | Man page Source code |
| estimateTwoLocusInbreeding | Man page Source code |
| estimateTwoLocusKappa | Man page Source code |
| estimateTwoLocusKinship | Man page Source code |
| extractIds | Man page Source code |
| findPattern | Man page Source code |
| genedrop | Source code |
| genedrop.singlechrom | Source code |
| genomeMap | Source code |
| groupOverlaps | Source code |
| haploDraw | Man page Source code |
| ibdState | Source code |
| ibdsim | Man page Source code |
| ibdsim2 | Man page |
| ibdsim2-package | Man page |
| isChromMap | Source code |
| isCount | Source code |
| isGenomeMap | Source code |
| isXmap | Source code |
| isXsim | Source code |
| jacquardState | Source code |
| karyoDiploid | Man page Source code |
| karyoHaploid | Man page Source code |
| karyogram1 | Source code |
| karyogram2 | Man page Source code |
| launchApp | Man page Source code |
| legacy_decode19 | Man page |
| loadMap | Man page Source code |
| mapLen | Man page Source code |
| mapLen.chromMap | Man page Source code |
| mapLen.genomeMap | Man page Source code |
| maplengths | Man page |
| meiosis | Source code |
| mergeSegments | Source code |
| physRange | Man page Source code |
| physRange.chromMap | Man page Source code |
| physRange.genomeMap | Man page Source code |
| plotSegmentDistribution | Man page Source code |
| plotSegmentDistribution.autoz | Source code |
| plotSegmentDistribution.ibd1 | Source code |
| pos2allele | Source code |
| prepare_segments | Source code |
| print.chromMap | Source code |
| print.genomeMap | Source code |
| print.genomeSimList | Source code |
| profileSimIBD | Man page Source code |
| rangeUnion | Source code |
| realised | Man page |
| realisedIdentity | Man page Source code |
| realisedInbreeding | Man page Source code |
| realisedKappa | Man page Source code |
| realisedKinship | Man page Source code |
| recombine | Source code |
| safeMax | Source code |
| safeMean | Source code |
| safeMin | Source code |
| sample_12_C | Source code |
| sample_int_C | Source code |
| segmentStats | Man page Source code |
| segmentUnion | Source code |
| sort_dbl_C | Source code |
| stackIntervals | Source code |
| stop2 | Source code |
| toString2 | Source code |
| uniformMap | Man page Source code |
| zeroIBD | Man page Source code |
