afl2_chrpos: Look up allele frequencies and LD scores for 1000 genomes...

In ieugwasr: Interface to the 'OpenGWAS' Database API

Look up allele frequencies and LD scores for 1000 genomes populations by chrpos

Description

Look up allele frequencies and LD scores for 1000 genomes populations by chrpos

Usage

afl2_chrpos(chrpos, reference = "1000g", opengwas_jwt = get_opengwas_jwt())

Arguments

chrpos	list of ⁠<chr>:<pos>⁠ in build 37, e.g. c("3:46414943", "3:122991235"). Also allows ranges e.g "7:105561135-105563135"
reference	Default="1000g"
opengwas_jwt	Used to authenticate protected endpoints. Login to https://api.opengwas.io to obtain a jwt. Provide the jwt string here, or store in .Renviron under the keyname OPENGWAS_JWT.

Value

Data frame containing ancestry specific LD scores and allele frequencies for each variant

ieugwasr documentation built on July 2, 2024, 1:06 a.m.