gwasinfo_files: Get list of download URLs each file (.vcf.gz, .vcf.gz.tbi,...
In ieugwasr: Interface to the 'OpenGWAS' Database API
gwasinfo_files R Documentation
Get list of download URLs each file (.vcf.gz, .vcf.gz.tbi, _report.html) associated with the dataset.
The URLs will expire in 2 hours.
If a dataset is missing from the results,
that means the dataset doesn't exist or you don't have access to it.
If a dataset is in the results but some/all links are missing, that means the files are unavailable.
Description
Get list of download URLs each file (.vcf.gz, .vcf.gz.tbi, _report.html) associated with the dataset.
The URLs will expire in 2 hours.
If a dataset is missing from the results,
that means the dataset doesn't exist or you don't have access to it.
If a dataset is in the results but some/all links are missing, that means the files are unavailable.
Usage
gwasinfo_files(id, opengwas_jwt = get_opengwas_jwt())
Arguments
id
List of MR-Base IDs to retrieve.
opengwas_jwt
Used to authenticate protected endpoints. Login to https://api.opengwas.io to obtain a JWT. Provide the JWT string here, or store in .Renviron under the keyname OPENGWAS_JWT.
Value
Dataframe of details for requested studies
ieugwasr documentation built on April 3, 2025, 7:39 p.m.
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| gwasinfo_files | R Documentation |
Get list of download URLs each file (.vcf.gz, .vcf.gz.tbi, _report.html) associated with the dataset. The URLs will expire in 2 hours. If a dataset is missing from the results, that means the dataset doesn't exist or you don't have access to it. If a dataset is in the results but some/all links are missing, that means the files are unavailable.
Description
Get list of download URLs each file (.vcf.gz, .vcf.gz.tbi, _report.html) associated with the dataset. The URLs will expire in 2 hours. If a dataset is missing from the results, that means the dataset doesn't exist or you don't have access to it. If a dataset is in the results but some/all links are missing, that means the files are unavailable.
Usage
gwasinfo_files(id, opengwas_jwt = get_opengwas_jwt())
Arguments
id |
List of MR-Base IDs to retrieve. |
opengwas_jwt |
Used to authenticate protected endpoints. Login to https://api.opengwas.io to obtain a JWT. Provide the JWT string here, or store in .Renviron under the keyname OPENGWAS_JWT. |
Value
Dataframe of details for requested studies
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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