phewas: Perform fast phewas of a specific variants against all...

In ieugwasr: Interface to the 'OpenGWAS' Database API

Perform fast phewas of a specific variants against all available GWAS datasets

Description

This is faster than doing it manually through associations

Usage

phewas(
  variants,
  pval = 1e-05,
  batch = c(),
  opengwas_jwt = get_opengwas_jwt(),
  ...
)

Arguments

variants	Array of variants e.g. c("rs234", "7:105561135-105563135")
pval	p-value threshold. Default = 0.00001
batch	Vector of batch IDs to search across. If c() (default) then returns all batches
opengwas_jwt	Used to authenticate protected endpoints. Login to https://api.opengwas.io to obtain a jwt. Provide the jwt string here, or store in .Renviron under the keyname OPENGWAS_JWT.
...	Unused, for extensibility

Value

Dataframe

ieugwasr documentation built on Oct. 7, 2026, 5:08 p.m.