variants_chrpos: Obtain information about chr pos and surrounding region

In ieugwasr: Interface to the 'OpenGWAS' Database API

Obtain information about chr pos and surrounding region

Description

For a list of chromosome and positions, finds all variants within a given radius

Usage

variants_chrpos(chrpos, radius = 0, opengwas_jwt = get_opengwas_jwt())

Arguments

chrpos	list of ⁠<chr>:<pos>⁠ in build 37, e.g. c("3:46414943", "3:122991235"). Also allows ranges e.g. "7:105561135-105563135"
radius	Radius around each chrpos, default = 0
opengwas_jwt	Used to authenticate protected endpoints. Login to https://api.opengwas.io to obtain a jwt. Provide the jwt string here, or store in .Renviron under the keyname OPENGWAS_JWT.

Value

Data frame

ieugwasr documentation built on July 2, 2024, 1:06 a.m.