API for immuneSIM
Tunable Simulation of B- And T-Cell Receptor Repertoires
| Global functions | |
|---|---|
| .add_clone_count | Source code |
| .calc_vdj_occ | Source code |
| .dropout_VDJ | Source code |
| .get_AA_freq_distribution | Source code |
| .immuneSim_random | Source code |
| .immuneSim_standard | Source code |
| .kmer_occurrence_opt_k_m_gen | Source code |
| .make_kmer_dictionary | Source code |
| .new_insertion_deletion_df | Source code |
| .noiseify_VDJ_freqs | Source code |
| .plot_report_repertoire_AA_freq | Source code |
| .plot_report_repertoire_AA_freq_comparative | Source code |
| .plot_vdj_occ | Source code |
| .record_shm_events | Source code |
| .somatic_hypermutation_sim | Source code |
| .theme.akbar | Source code |
| .update_vdj_freqs | Source code |
| codon_replacement | Man page Source code |
| codon_replacement_reconstruction | Man page Source code |
| combine_into_paired | Man page Source code |
| gen_code | Man page |
| hotspot_df | Man page |
| hub_seqs_exclusion | Man page Source code |
| immuneSIM | Man page Source code |
| insertions_and_deletion_lengths_df | Man page |
| length_dist_simulation | Man page |
| list_example_repertoires | Man page |
| list_germline_genes_allele_01 | Man page |
| load_insdel_data | Man page Source code |
| motif_implantation | Man page Source code |
| one_spot_df | Man page |
| plot_repertoire_A_vs_B | Man page Source code |
| plot_report_repertoire | Man page Source code |
| shm_event_reconstruction | Man page Source code |
