Files in immuneSIM
Tunable Simulation of B- And T-Cell Receptor Repertoires
MD5
DESCRIPTION
NAMESPACE
R/data.R
R/immuneSIM.R
R/update_vdj_freqs.R
R/plot_report_repertoire_AA_freq.R
R/add_clone_count.R
R/plot_report_repertoire.R
R/plot_vdj_occ.R
R/new_insertion_deletion_df.R
R/codon_replacement.R
R/get_AA_freq_distribution.R
R/noiseify_VDJ_freqs.R
R/kmer_occurrence_opt_k_m_gen.R
R/combine_into_paired.R
R/plot_report_repertoire_AA_freq_comparative.R
R/record_shm_events.R
R/immuneSim_random.R
R/motif_implantation.R
R/dropout_VDJ.R
R/make_kmer_dictionary.R
R/shm_event_reconstruction.R
R/hub_seqs_exclusion.R
R/sysdata.rda
R/load_insdel_data.R
R/plot_repertoire_A_vs_B.R
R/immuneSim_standard.R
R/somatic_hypermutation_sim.R
R/calc_vdj_occ.R
R/theme_akbar.R
R/codon_replacement_reconstruction.R
man/load_insdel_data.Rd
man/codon_replacement_reconstruction.Rd
man/one_spot_df.Rd
man/combine_into_paired.Rd
man/length_dist_simulation.Rd
man/immuneSIM.Rd
man/motif_implantation.Rd
man/gen_code.Rd
man/hotspot_df.Rd
man/insertions_and_deletion_lengths_df.Rd
man/codon_replacement.Rd
man/hub_seqs_exclusion.Rd
man/list_germline_genes_allele_01.Rd
man/plot_report_repertoire.Rd
man/plot_repertoire_A_vs_B.Rd
man/shm_event_reconstruction.Rd
man/list_example_repertoires.Rd
