API for immuneSIM
Tunable Simulation of B- And T-Cell Receptor Repertoires

Global functions
.add_clone_count Source code
.calc_vdj_occ Source code
.dropout_VDJ Source code
.get_AA_freq_distribution Source code
.immuneSim_random Source code
.immuneSim_standard Source code
.kmer_occurrence_opt_k_m_gen Source code
.make_kmer_dictionary Source code
.new_insertion_deletion_df Source code
.noiseify_VDJ_freqs Source code
.plot_report_repertoire_AA_freq Source code
.plot_report_repertoire_AA_freq_comparative Source code
.plot_vdj_occ Source code
.record_shm_events Source code
.somatic_hypermutation_sim Source code
.theme.akbar Source code
.update_vdj_freqs Source code
codon_replacement Man page Source code
codon_replacement_reconstruction Man page Source code
combine_into_paired Man page Source code
gen_code Man page
hotspot_df Man page
hub_seqs_exclusion Man page Source code
immuneSIM Man page Source code
insertions_and_deletion_lengths_df Man page
length_dist_simulation Man page
list_example_repertoires Man page
list_germline_genes_allele_01 Man page
load_insdel_data Man page Source code
motif_implantation Man page Source code
one_spot_df Man page
plot_repertoire_A_vs_B Man page Source code
plot_report_repertoire Man page Source code
shm_event_reconstruction Man page Source code
immuneSIM documentation built on Sept. 27, 2019, 5:02 p.m.