Description Usage Arguments Value Examples
View source: R/plot_report_repertoire.R
Plots main repertoire features (length distribution,amino acid frequencies and VDJ usage)
1 | plot_report_repertoire(repertoire, output_dir = "", verbose = TRUE)
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repertoire |
An annotated AIRR-compliant immuneSIM repertoire. (http://docs.airr-community.org/en/latest/) |
output_dir |
String containing full path of desired output folder. If empty figures will be output in tempdir(). |
verbose |
Determines whether messages on plot locations are output to user. (Default: TRUE) |
TRUE (plots saved as pdfs into subfolder 'figures')
1 2 | repertoire <- list_example_repertoires[["example_repertoire_A"]]
plot_report_repertoire(repertoire,output_dir="")
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