Description Usage Arguments Value Examples
View source: R/shm_event_reconstruction.R
Decodes immuneSIM repertoire shm_events column.
1 | shm_event_reconstruction(shm_event_vec)
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shm_event_vec |
An vector containing strings describing SHM events as output in shm_events column of immuneSIM repertoires. The string contains information on every mutation event in the form: "Position:pre_mutation_nucleotide,post_mutation_nucleotide" combined as: "Mutation1|Mutation2|Mutation3". For example: "171:t,a|186:g,a". |
List of dataframes. Each entry contains location and shm mutation info for a simulated sequence
1 2 | shm_events_example<-c("171:t,a|186:g,a|287:g,a|310:t,c","","294:c,g|316:t,c|330:c,t")
shm_list<-shm_event_reconstruction(shm_events_example)
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