intensity_PXD000052: Dataset PXD000052 from ProteomeXchange.
In imputeLCMD: A Collection of Methods for Left-Censored Missing Data Imputation
intensity_PXD000052 R Documentation
Dataset PXD000052 from ProteomeXchange.
Description
This dataset has been collected during a study designed to perform
the proteomic analysis of the SLP76 interactome in resting and activated primary
mast cells. Four SLP76 replicates (with two analytical replicates each) have been
affinity-purified from both resting and activated primary mast cells. The dataset
within this package contains proteins intensity processed using MaxQuant.
More information can be found on ProteomeExchange public repository
(http://proteomecentral.proteomexchange.org/cgi/GetDataset?ID=PXD000052) or
in the original paper (see reference).
Usage
data(intensity_PXD000052)
Format
A data frame with 1991 observations on the following 17 variables.
Protein.IDsPeptides/Proteins names
iBAQ.stSLP_activ1a numeric vector
iBAQ.stSLP_activ2a numeric vector
iBAQ.stSLP_activ3a numeric vector
iBAQ.stSLP_activ4a numeric vector
iBAQ.stSLP_rest1a numeric vector
iBAQ.stSLP_rest2a numeric vector
iBAQ.stSLP_rest3a numeric vector
iBAQ.stSLP_rest4a numeric vector
iBAQ.WT_activ1a numeric vector
iBAQ.WT_activ2a numeric vector
iBAQ.WT_activ3a numeric vector
iBAQ.WT_activ4a numeric vector
iBAQ.WT_rest1a numeric vector
iBAQ.WT_rest2a numeric vector
iBAQ.WT_rest3a numeric vector
iBAQ.WT_rest4a numeric vector
Source
Original MaxQuant data:
http://proteomecentral.proteomexchange.org/cgi/GetDataset?ID=PXD000052
References
Bounab Y, Hesse AM, Iannascoli B, Grieco L, Coute Y, Niarakis A,
Roncagalli R, Lie E, Lam KP, Demangel C, Thieffry D, Garin J, Malissen B,
Da?ron M, Proteomic analysis of the SH2 domain-containing leukocyte protein
of 76 kDa (SLP76) interactome in resting and activated primary mast cells [corrected].
Mol Cell Proteomics, 12(10):2874-89(2013).
imputeLCMD documentation built on June 10, 2022, 5:09 p.m.
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| intensity_PXD000052 | R Documentation |
Dataset PXD000052 from ProteomeXchange.
Description
This dataset has been collected during a study designed to perform the proteomic analysis of the SLP76 interactome in resting and activated primary mast cells. Four SLP76 replicates (with two analytical replicates each) have been affinity-purified from both resting and activated primary mast cells. The dataset within this package contains proteins intensity processed using MaxQuant. More information can be found on ProteomeExchange public repository (http://proteomecentral.proteomexchange.org/cgi/GetDataset?ID=PXD000052) or in the original paper (see reference).
Usage
data(intensity_PXD000052)
Format
A data frame with 1991 observations on the following 17 variables.
Protein.IDsPeptides/Proteins names
iBAQ.stSLP_activ1a numeric vector
iBAQ.stSLP_activ2a numeric vector
iBAQ.stSLP_activ3a numeric vector
iBAQ.stSLP_activ4a numeric vector
iBAQ.stSLP_rest1a numeric vector
iBAQ.stSLP_rest2a numeric vector
iBAQ.stSLP_rest3a numeric vector
iBAQ.stSLP_rest4a numeric vector
iBAQ.WT_activ1a numeric vector
iBAQ.WT_activ2a numeric vector
iBAQ.WT_activ3a numeric vector
iBAQ.WT_activ4a numeric vector
iBAQ.WT_rest1a numeric vector
iBAQ.WT_rest2a numeric vector
iBAQ.WT_rest3a numeric vector
iBAQ.WT_rest4a numeric vector
Source
Original MaxQuant data: http://proteomecentral.proteomexchange.org/cgi/GetDataset?ID=PXD000052
References
Bounab Y, Hesse AM, Iannascoli B, Grieco L, Coute Y, Niarakis A, Roncagalli R, Lie E, Lam KP, Demangel C, Thieffry D, Garin J, Malissen B, Da?ron M, Proteomic analysis of the SH2 domain-containing leukocyte protein of 76 kDa (SLP76) interactome in resting and activated primary mast cells [corrected]. Mol Cell Proteomics, 12(10):2874-89(2013).
R Package Documentation
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