intensity_PXD000438: Dataset PXD000438 from ProteomeXchange.

In imputeLCMD: A Collection of Methods for Left-Censored Missing Data Imputation

Dataset PXD000438 from ProteomeXchange.

Description

This dataset has been collected during a study designed to compare human primary tumor-derived xenograph proteomes of the two major histological non-small cel lung cancer subtypes: adenocarcinoma (ADC) and squamous cell carcinoma (SCC). The dataset within this package contains proteins intensity for 6 ADC and 6 SCC samples, processed using MaxQuant. More information can be found on ProteomeExchange public repository(http://proteomecentral.proteomexchange.org/cgi/GetDataset?ID=PXD000438) or in the original paper (see reference).

Usage

data(intensity_PXD000438)

Format

A data frame with 3709 observations on the following 13 variables.

Protein.IDs

Peptides/Proteins names

Intensity.092.1

a numeric vector

Intensity.092.2

a numeric vector

Intensity.092.3

a numeric vector

Intensity.441.1

a numeric vector

Intensity.441.2

a numeric vector

Intensity.441.3

a numeric vector

Intensity.561.1

a numeric vector

Intensity.561.2

a numeric vector

Intensity.561.3

a numeric vector

Intensity.691.1

a numeric vector

Intensity.691.2

a numeric vector

Intensity.691.3

a numeric vector

Source

Original MaxQuant data: http://proteomecentral.proteomexchange.org/cgi/GetDataset?ID=PXD000438

References

Zhang W, Wei Y, Ignatchenko V, Li L, Sakashita S, Pham NA, Taylor P, Tsao MS, Kislinger T, Moran MF, Proteomic profiles of human lung adeno and squamous cell carcinoma using super-SILAC and label-free quantification approaches. Proteomics, 14(6):795-803(2014).

Examples

  data(intensity_PXD000438)

imputeLCMD documentation built on June 10, 2022, 5:09 p.m.