intensity_PXD000501: Dataset PXD000501 from ProteomeXchange.

In imputeLCMD: A Collection of Methods for Left-Censored Missing Data Imputation

Dataset PXD000501 from ProteomeXchange.

Description

This dataset contains three biological replicates with three technical replicates each for the conditiones media (CM) and the whole cell lysates (WCL) of C8-D1A cell lines. The dataset within this package contains proteins iBAQ intensity processed using MaxQuant. More information can be found on ProteomeExchange public repository (http://proteomecentral.proteomexchange.org/cgi/GetDataset?ID=PXD000501) or in the original paper (see reference).

Usage

data(intensity_PXD000501)

Format

A data frame with 7363 observations on the following 19 variables.

Protein.IDs

Peptides/Proteins names

iBAQ.secretome_set1_tech1

a numeric vector

iBAQ.secretome_set1_tech2

a numeric vector

iBAQ.secretome_set1_tech3

a numeric vector

iBAQ.secretome_set2_tech1

a numeric vector

iBAQ.secretome_set2_tech2

a numeric vector

iBAQ.secretome_set2_tech3

a numeric vector

iBAQ.secretome_set3_tech1

a numeric vector

iBAQ.secretome_set3_tech2

a numeric vector

iBAQ.secretome_set3_tech3

a numeric vector

iBAQ.whole_set1_tech1

a numeric vector

iBAQ.whole_set1_tech2

a numeric vector

iBAQ.whole_set1_tech3

a numeric vector

iBAQ.whole_set2_tech1

a numeric vector

iBAQ.whole_set2_tech2

a numeric vector

iBAQ.whole_set2_tech3

a numeric vector

iBAQ.whole_set3_tech1

a numeric vector

iBAQ.whole_set3_tech2

a numeric vector

iBAQ.whole_set3_tech3

a numeric vector

Source

Original MaxQuant data: http://proteomecentral.proteomexchange.org/cgi/GetDataset?ID=PXD000501

References

Han D, Jin J, Woo J, Min H, Kim Y, Proteomic analysis of mouse astrocytes and their secretome by a combination of FASP and StageTip-based, high pH, reversed-phase fractionation. Proteomics, ():(2014).

Examples

  data(intensity_PXD000501)

imputeLCMD documentation built on June 10, 2022, 5:09 p.m.