ktspair: k-Top Scoring Pairs for Microarray Classification

These functions compute the k best pairs of genes used to classify samples based on the relative rank of the genes expression within each profile. A score based on the sensitivity and the specificity is calculated for every possible pair. The k pairs with the highest score will be selected with the restriction that a gene can appear in at most one pair. The value of k is either set as a parameter chosen by the user or computed through crossvalidation. Other functions related to the k-TSP are also available, for example the functions prediction, summary, plot, etc. can be found in the package.

AuthorJulien Damond <julien.damond@gmail.com>
Date of publication2011-12-23 10:06:13
MaintainerJulien Damond <julien.damond@gmail.com>
LicenseGPL-2
Version1.0

View on CRAN

Functions

AUC.calc Man page
bootstrap.graphic.ktsp Man page
bootstrap.ktsp Man page
cv Man page
cv2 Man page
dat Man page
eSet Man page
grp Man page
ktspair Man page
kts.pair Man page
ktspair-package Man page
ktspcalc Man page
ktspcalc2 Man page
ktspdata} \title{Simulated dataset of gene expressions in a mat Man page
ktspplot Man page
make.consecutive.int Man page
ordertsp Man page
plot.ktsp Man page
predict.ktsp Man page
print.ktsp Man page
rank_na Man page
ROC.graphic.ktsp Man page
ROC.offset Man page
ROC.voting Man page
summary.ktsp Man page

Files

ktspair
ktspair/MD5
ktspair/src
ktspair/src/ktsp.cc
ktspair/R
ktspair/R/summary.ktsp.r
ktspair/R/ROC.voting.r
ktspair/R/ROC.offset.r
ktspair/R/ROC.graphic.ktsp.r
ktspair/R/rank_na.r
ktspair/R/print.ktsp.r
ktspair/R/predict.ktsp.r
ktspair/R/plot.ktsp.r
ktspair/R/ordertsp.r
ktspair/R/make.consecutive.int.r
ktspair/R/ktspplot.r
ktspair/R/ktspcalc2.r
ktspair/R/ktspcalc.r
ktspair/R/kts.pair.r
ktspair/R/cv2.r
ktspair/R/cv.r
ktspair/R/bootstrap.ktsp.r
ktspair/R/bootstrap.graphic.ktsp.r
ktspair/R/AUC.calc.r
ktspair/NAMESPACE
ktspair/man
ktspair/man/summary.ktsp.Rd ktspair/man/ROC.voting.Rd ktspair/man/ROC.offset.Rd ktspair/man/ROC.graphic.ktsp.Rd ktspair/man/rank_na.Rd ktspair/man/print.ktsp.Rd ktspair/man/predict.ktsp.Rd ktspair/man/plot.ktsp.Rd ktspair/man/ordertsp.Rd ktspair/man/make.consecutive.int.Rd ktspair/man/ktspplot.Rd ktspair/man/ktspdata.Rd ktspair/man/ktspcalc2.Rd ktspair/man/ktspcalc.Rd ktspair/man/ktspair-package.Rd ktspair/man/kts.pair.Rd ktspair/man/grp.Rd ktspair/man/eSet.Rd ktspair/man/dat.Rd ktspair/man/cv2.Rd ktspair/man/cv.Rd ktspair/man/bootstrap.ktsp.Rd ktspair/man/bootstrap.graphic.ktsp.Rd ktspair/man/AUC.calc.Rd
ktspair/inst
ktspair/inst/doc
ktspair/inst/doc/ktspair-manual.pdf
ktspair/inst/doc/.fr-hy2VZf
ktspair/inst/doc/.fr-hy2VZf/ktspairextend
ktspair/inst/doc/.fr-hy2VZf/ktspairextend/inst
ktspair/inst/doc/.fr-hy2VZf/ktspairextend/inst/doc
ktspair/inst/doc/.fr-hy2VZf/ktspairextend/inst/doc/ktspair-manual.pdf
ktspair/INDEX
ktspair/DESCRIPTION
ktspair/demo
ktspair/demo/ktspair.r
ktspair/demo/00Index
ktspair/data
ktspair/data/ktspdata.RData
ktspair/.Rbuildindex.9995
ktspair/.Rbuildindex.31678
ktspair/.Rbuildindex.31551
ktspair/.Rbuildindex.10034

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.