print.ktsp: Print the results of the k-TSP

In ktspair: k-Top Scoring Pairs for Microarray Classification

Description

This function is used to print the results of a ktsp object.

Usage

print.ktsp(x,...)

Arguments

x	A ktsp object.
...	Plotting arguments, not used

Details

It prints the results of the k-TSP. More precisely, the number of pairs used in the k-TSP, the gene present in the pairs and the score of each pair.

Value

No value is returned. A table is ploted.

Note

Once the function ktsp.print is defined, writing "x" has the same effect as writing "print.ktsp(x)", where x is a ktsp object.

Author(s)

Julien Damond [e-mail]

References

D. Geman, C. d'Avignon, D. Naiman and R. Winslow, "Classifying gene expression profiles from pairwise mRNA comparisons," Statist. Appl. in Genetics and Molecular Biology, 3, 2004.

A.C. Tan, D.Q. Naiman, L. Xu, R.L. Winslow, D. Geman, "Simple decision rules for classifying human cancers from gene expression profiles," Bioinformatics, 21: 3896-3904, 2005.

J. Damond, supervised by S. Morgenthaler and S. Hosseinian, "Presentation and study of robustness for several methods to classify individuals based on their gene expressions", Master thesis, Swiss Federal Institute of Technology Lausanne (Switzerland), 2011.

J. Damond, S. Morgenthaler, S. Hosseinian, "The robustness of the TSP and the k-TSP and the computation of ROC curves", paper is submitted in Bioinformatics, December 2011.

Jeffrey T. Leek <[e-mail]> (). tspair: Top Scoring Pairs for Microarray Classification. R package version 1.10.0.

See Also

ktspcalc, kts.pair,predict.ktsp, summary.ktsp

Examples

  ## Not run: 
  ## Load data
  data(ktspdata)
  ktsp <- ktspcalc(dat, grp, 3)
  ktsp.print(ktsp)
  ktsp
  
## End(Not run)

ktspair documentation built on May 2, 2019, 3:25 a.m.