landsepi: Landscape Epidemiology and Evolution

A stochastic, spatially-explicit, demo-genetic model simulating the spread and evolution of a plant pathogen in a heterogeneous landscape to assess resistance deployment strategies. It is based on a spatial geometry for describing the landscape and allocation of different cultivars, a dispersal kernel for the dissemination of the pathogen, and a SEIR ('Susceptible-Exposed-Infectious-Removed’) structure with a discrete time step. It provides a useful tool to assess the performance of a wide range of deployment options with respect to their epidemiological, evolutionary and economic outcomes. Loup Rimbaud, Julien Papaïx, Jean-François Rey, Luke G Barrett, Peter H Thrall (2018) <doi:10.1371/journal.pcbi.1006067>.

Package details

AuthorLoup Rimbaud [aut], Julien Papaix [aut], Jean-Francois Rey [cre], Jean-Loup Gaussen [ctb]
MaintainerJean-Francois Rey <jean-francois.rey@inrae.fr>
LicenseGPL (>= 2) | file LICENSE
Version1.0.2
URL https://gitlab.paca.inrae.fr/CSIRO-INRA/landsepi
Package repositoryView on CRAN
Installation Install the latest version of this package by entering the following in R:
install.packages("landsepi")

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landsepi documentation built on Dec. 1, 2020, 1:09 a.m.