Files in landsepi
Landscape Epidemiology and Evolution
configure
MD5
NEWS.md
NAMESPACE
configure.ac
DESCRIPTION
LICENSE
R/RcppExports.R
R/landsepi.R
R/Methods-LandsepiParams.R
R/Cultivars_List.R
R/demo_landsepi.R
R/Math-Functions.R
R/output.R
R/simul_landsepi.R
R/AgriLand.R
R/tools.R
R/graphics.R
R/Class-LandsepiParams.R
R/runShiny.R
R/GPKGTools.R
src/printReadWrite.cpp
src/Makevars.win
src/Treatment.cpp
src/functions.cpp
src/RcppExports.cpp
src/Gene.cpp
src/functions.hpp
src/Basic_patho.hpp
src/gprof.cpp
src/Basic_patho.cpp
src/Cultivar.cpp
src/Model.cpp
src/Croptype.cpp
src/printReadWrite.hpp
src/Model.hpp
src/Cultivar.hpp
src/Makevars.in
src/initialisation.cpp
src/Croptype.hpp
src/Treatment.hpp
src/Gene.hpp
inst/CITATION
inst/doc/O4-run_sex_repro.html
inst/doc/O2-run_exp_design.Rmd
inst/doc/landsepi_poster.Rnw
inst/doc/O4-run_sex_repro.Rmd
inst/doc/O4-run_sex_repro.R
inst/doc/O3-landscape_dispersal.R
inst/doc/O1-run_simple_simul.html
inst/doc/O3-landscape_dispersal.html
inst/doc/O2-run_exp_design.R
inst/doc/O2-run_exp_design.html
inst/doc/O3-landscape_dispersal.Rmd
inst/doc/O1-run_simple_simul.Rmd
inst/doc/list_of_parameters.pdf
inst/doc/landsepi_poster.pdf
inst/doc/list_of_parameters.Rnw
inst/doc/O1-run_simple_simul.R
inst/shiny-landsepi/app.R
inst/shiny-landsepi/ui.R
inst/shiny-landsepi/global.R
inst/shiny-landsepi/Dockerfile
inst/shiny-landsepi/server.R
inst/shiny-landsepi/www/Republique_Francaise_RVB.jpg
inst/shiny-landsepi/www/CSIRO_Logo.png
inst/shiny-landsepi/www/logoBIOSP.jpeg
inst/shiny-landsepi/www/style.css
inst/shiny-landsepi/www/LogoINRAE_Fr_rvb_web.png
inst/shiny-landsepi/www/PATHO_inra_logo.png
inst/shiny-landsepi/www/script.js
inst/shiny-landsepi/www/landsepi-logo.png
inst/shiny-landsepi/modules/editableDT.R
build/vignette.rds
tests/testthat.R
tests/testthat/test.shx
tests/testthat/test-invlogit.R
tests/testthat/test.shp
tests/testthat/test-logit.R
tests/testthat/test-LandsepiParams-Method.R
vignettes/O2-run_exp_design.Rmd
vignettes/landsepi_poster.Rnw
vignettes/O4-run_sex_repro.Rmd
vignettes/landsepiposter.pdf
vignettes/listofparameters.pdf
vignettes/O3-landscape_dispersal.Rmd
vignettes/O1-run_simple_simul.Rmd
vignettes/list_of_parameters.Rnw
data/landscapesTEST.rda
data/dispP_a40_b7.rda
tools/winlibs.R
man/loadSimulParams.Rd
man/setDispersalPathogen.Rd
man/loadDispersalHost.Rd
man/checkOutputs.Rd
man/model_landsepi.Rd
man/loadLandscape.Rd
man/checkCultivars.Rd
man/setSeedValue.Rd
man/plotland.Rd
man/summary-methods.Rd
man/checkGenes.Rd
man/checkLandscape.Rd
man/video.Rd
man/Cultivars_list.Rd
man/compute_audpc100S.Rd
man/checkPathogen.Rd
man/runSimul.Rd
man/switch_patho_to_aggr.Rd
man/logit.Rd
man/setInoculum.Rd
man/setSeed.Rd
man/checkCroptypes.Rd
man/invlogit.Rd
man/is.wholenumber.Rd
man/epid_output.Rd
man/loadOutputs.Rd
man/LandsepiParams.Rd
man/createSimulParams.Rd
man/landsepi-package.Rd
man/checkDispersalHost.Rd
man/loadGene.Rd
man/initialize-methods.Rd
man/is.strict.positive.Rd
man/resetCultivarsGenes.Rd
man/loadCultivar.Rd
man/loadDispersalPathogen.Rd
man/periodic_cov.Rd
man/dispP.Rd
man/setTreatment.Rd
man/is.positive.Rd
man/antideriv_verhulst.Rd
man/loadCroptypes.Rd
man/checkInoculum.Rd
man/setCroptypes.Rd
man/setPathogen.Rd
man/loadTreatment.Rd
man/evol_output.Rd
man/multiN.Rd
man/setTime.Rd
man/setCultivars.Rd
man/loadPathogen.Rd
man/plot_allocation.Rd
man/is.in.01.Rd
man/price_reduction.Rd
man/checkDispersalPathogen.Rd
man/AgriLand.Rd
man/checkSimulParams.Rd
man/checkCultivarsGenes.Rd
man/setDispersalHost.Rd
man/runShinyApp.Rd
man/setReproSexProb.Rd
man/setGenes.Rd
man/setLansdcape.Rd
man/allocateCultivarGenes.Rd
man/plot_freqPatho.Rd
man/demo_landsepi.Rd
man/landscapeTEST.Rd
man/checkTime.Rd
man/allocateCroptypeCultivars.Rd
man/setOutputs.Rd
man/checkTreatment.Rd
man/simul_landsepi.Rd
man/saveDeploymentStrategy.Rd
man/show-methods.Rd
man/print-methods.Rd
man/allocateLandscapeCroptypes.Rd
