allocateCultivarGenes: Allocate genes to a cultivar

In landsepi: Landscape Epidemiology and Evolution

Allocate genes to a cultivar

Description

Updates a LandsepiParams object with, for a given cultivar, the list of genes it carries

Usage

allocateCultivarGenes(
  params,
  cultivarName,
  listGenesNames = c(""),
  force.clean = FALSE
)

Arguments

params	a LandsepiParams object.
cultivarName	the name of the cultivar to be allocated.
listGenesNames	the names of the genes the cultivar carries
force.clean	force to clean previous allocated genes to all cultivars

Value

a LandsepiParams object

See Also

setGenes, setCultivars

Examples

## Not run: 
simul_params <- createSimulParams()
gene1 <- loadGene(name = "MG 1", type = "majorGene")
gene2 <- loadGene(name = "MG 2", type = "majorGene")
genes <- data.frame(rbind(gene1, gene2), stringsAsFactors = FALSE)
simul_params <- setGenes(simul_params, genes)
cultivar1 <- loadCultivar(name = "Susceptible", type = "growingHost")
cultivar2 <- loadCultivar(name = "Resistant", type = "growingHost")
cultivars <- data.frame(rbind(cultivar1, cultivar2), stringsAsFactors = FALSE)
simul_params <- setCultivars(simul_params, cultivars)
simul_params <- allocateCultivarGenes(simul_params, "Resistant", c("MG 1", "MG 2"))
simul_params@CultivarsGenes

## End(Not run)

landsepi documentation built on July 26, 2023, 5:36 p.m.