Nothing
## ----setup1, include=FALSE, echo=FALSE-----------------------------------
require(knitr)
## ----setup2, include=FALSE,echo=FALSE-----------------------------------------
options(width=80) # make the printing fit on the page
set.seed(1121) # make the results repeatable
stdt<-date()
## ----beta, eval=FALSE---------------------------------------------------------
# beta <- betaEst(fam_group, alpha, dtime, delta,
# g, var, lower = 0, upper = 2)
## ----var, eval=FALSE----------------------------------------------------------
# var <- varEst(fam_group, alpha, dtime, delta,
# g, beta, lower = 0, upper = 2)
## ----alpha, eval=FALSE--------------------------------------------------------
# alpha <- alphaEst(dtime, delta)
## ----inputPara----------------------------------------------------------------
alphas <- c(0.75, 0.6666667, 0.5, 0.0)
fgrp <- c(1, 1, 1, 2, 2, 2, 3, 3, 3)
dtimes <- c(1, 3, 3, 4, 1, 1, 2, 3, 1)
deltas <- c(1, 0, 1, 1, 1, 0, 1, 0, 1)
gs <- c(0, 1, 1, 1, 2, 2, 0, 0, 0)
var <- 0.2
## ----loadpkg------------------------------------------------------------------
library(lclGWAS)
## ----expa,size='tiny'---------------------------------------------------------
alphaest <- alphaEst(dtimes, deltas)$alphaEst
alphaest
## ----expv,size='tiny'---------------------------------------------------------
var <- varEst(fgrp, alphaest, dtimes, deltas, gs, beta = 0, lower = 0, upper = 2)
var$varEst
## ----expb,size='tiny'---------------------------------------------------------
betaEst(fgrp, alphaest, dtimes, deltas, gs, var$varEst, lower = 0, upper = 2)
## ----sessinfo, echo=FALSE, include=TRUE, results='asis'-----------------------
toLatex(sessionInfo(), locale=FALSE)
## ----times, echo=FALSE, include=TRUE------------------------------------------
print(paste("Start Time",stdt))
print(paste("End Time ",date()))
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