HierarchicalClustering: Hierarchical Clustering

In less: Learning with Subset Stacking

Hierarchical Clustering

Description

Wrapper R6 Class of stats::hclust function that can be used for LESSRegressor and LESSClassifier

Value

R6 Class of HierarchicalClustering

Super class

less::BaseEstimator -> HierarchicalClustering

Methods

Public methods

• HierarchicalClustering$new()

• HierarchicalClustering$fit()

• HierarchicalClustering$get_cluster_centers()

• HierarchicalClustering$get_labels()

• HierarchicalClustering$clone()

Inherited methods

• less::BaseEstimator$get_all_fields()
• less::BaseEstimator$get_attributes()
• less::BaseEstimator$set_random_state()

---

Method new()

Creates a new instance of R6 Class of HierarchicalClustering

Usage

HierarchicalClustering$new(linkage = "ward.D2", n_clusters = 8)

Arguments

linkage

the agglomeration method to be used. This should be (an unambiguous abbreviation of) one of "ward.D", "ward.D2", "single", "complete", "average" (= UPGMA), "mcquitty" (= WPGMA), "median" (= WPGMC) or "centroid" (= UPGMC) (defaults to ward.D2).

n_clusters

the number of clusters (defaults to 8).

Examples

hc <- HierarchicalClustering$new()
hc <- HierarchicalClustering$new(n_clusters = 10)
hc <- HierarchicalClustering$new(n_clusters = 10, linkage = "complete")

---

Method fit()

Perform hierarchical clustering on a data matrix.

Usage

HierarchicalClustering$fit(X)

Arguments

X

numeric matrix of data, or an object that can be coerced to such a matrix (such as a numeric vector or a data frame with all numeric columns).

Returns

Fitted R6 class of HierarchicalClustering() that has 'labels' attribute

Examples

data(abalone)
hc <- HierarchicalClustering$new()
hc$fit(abalone[1:100,])

---

Method get_cluster_centers()

Auxiliary function returning the cluster centers

Usage

HierarchicalClustering$get_cluster_centers()

Examples

print(hc$get_cluster_centers())

---

Method get_labels()

Auxiliary function returning a vector of integers (from 1:k) indicating the cluster to which each point is allocated.

Usage

HierarchicalClustering$get_labels()

Examples

print(hc$get_labels())

---

Method clone()

The objects of this class are cloneable with this method.

Usage

HierarchicalClustering$clone(deep = FALSE)

Arguments

deep

Whether to make a deep clone.

See Also

stats::hclust()

Examples

## ------------------------------------------------
## Method `HierarchicalClustering$new`
## ------------------------------------------------

hc <- HierarchicalClustering$new()
hc <- HierarchicalClustering$new(n_clusters = 10)
hc <- HierarchicalClustering$new(n_clusters = 10, linkage = "complete")

## ------------------------------------------------
## Method `HierarchicalClustering$fit`
## ------------------------------------------------

data(abalone)
hc <- HierarchicalClustering$new()
hc$fit(abalone[1:100,])

## ------------------------------------------------
## Method `HierarchicalClustering$get_cluster_centers`
## ------------------------------------------------

print(hc$get_cluster_centers())

## ------------------------------------------------
## Method `HierarchicalClustering$get_labels`
## ------------------------------------------------

print(hc$get_labels())

less documentation built on Sept. 27, 2022, 5:05 p.m.