inst/doc/creating_an_so.R

In libsoc: Read, Create and Write 'PharmML' Standard Output (so) XML Files

## ----create_mle---------------------------------------------------------------
MLE <- data.frame(POP_CL=2.23, POP_V=40, IVCL=0.4, IVV=0.3)

## ----add_columntypes----------------------------------------------------------
attributes(MLE)$columnType <- list(c("structuralParameter"), c("structuralParameter"), c("varParameter", "variance"), c("varParameter", "variance"))

## ----create_popest_object-----------------------------------------------------
library(libsoc)
popest <- so_PopulationEstimates$new()

## ----attach_MLE---------------------------------------------------------------
popest$MLE <- MLE

## ----parent_objects-----------------------------------------------------------
est <- so_Estimation$new()
est$PopulationEstimates <- popest
block <- so_SOBlock$new()
block$blkId <- "myEstimationRun"
block$Estimation <- est
so <- so_SO$new()
so$add_SOBlock(block)

## ----add_message--------------------------------------------------------------
block$add_message("WARNING", "myTool", "name_of_warning", "This is the description", 2)

## ----add_rawres---------------------------------------------------------------
block$add_rawresults_datafile("Description", "file", "id1")

## ----result-------------------------------------------------------------------
so