kidneySimTimeGroup: Kidney Simulation Data

Description Usage Format Details Source References

Description

This data set contains the simulated expression of 140 proteins in 40 samples from either group 1 or group 2 measured on the time points 0, 0.5, 1, 2, 3, 4.

Usage

1

Format

A list containing the following components:

data

data matrix with 192 rows and 140 columns. Each row represents an experimental sample, and each column a single protein.

time

a numeric vector containing the time points on which each sample is measured

sampleID

a character vector containing the biological replicate information of each sample

group

a character vector indicating the group of each sample

Details

This simulated data set consists of 40 samples and 140 proteins and was based on an the existing study from Freue et al. (2010). Samples were measured on maximum 6 time points: 0, 0.5, 1, 2, 3, 4. Some samples have missing time points. 50 molecules were randomly selected to introduce a fold change of log(2).

Source

The Kidney Simulation Data is based on the the paper of Freue et al. (2010).

References

Freue, G. V. C. et al. (2010). Proteomic signatures in plasma during early acute renal allograft rejection. Molecular & cellular proteomics, 9, 1954-67.



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