lmmsde
class inherits from class lmms
and extends it with six further slots: DE, model.time, model.group, model.time.group, type and experiment. The class lmmsde
is returned when applying lmmsDE
method.
DE
A data.frame
returning p-values and adjusted p-values using Benjamini-Hochberg correction for multiple testing of the differential expression testing over time, group or their interaction.
modelsUsed
A list
of lme
, containing the models used to model the particular condition of interest.
predTime
A matrix
returning the predicted time fit.
predGroup
A matrix
returning the predicted group fit.
predTimeGroup
A matrix
returning the predicted time group interaction fit.
modelTime
A list
of classlme
, containing the models for every molecule modelling the time effect.
modelGroup
A list
of class lme
, containing the models for every molecule modelling group effect.
modelTimeGroup
A list
of class lme
, containing the models for every molecule modelling time and group interaction effect.
type
An object of class character
, describing the test performed.
experiment
An object of class character
describing the model used to perform differential expression analysis.
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