`lmmsde`

class inherits from class `lmms`

and extends it with six further slots: DE, model.time, model.group, model.time.group, type and experiment. The class `lmmsde`

is returned when applying `lmmsDE`

method.

`DE`

A

`data.frame`

returning p-values and adjusted p-values using Benjamini-Hochberg correction for multiple testing of the differential expression testing over time, group or their interaction.`modelsUsed`

A

`list`

of`lme`

, containing the models used to model the particular condition of interest.`predTime`

A

`matrix`

returning the predicted time fit.`predGroup`

A

`matrix`

returning the predicted group fit.`predTimeGroup`

A

`matrix`

returning the predicted time group interaction fit.`modelTime`

A

`list`

of class`lme`

, containing the models for every molecule modelling the time effect.`modelGroup`

A

`list`

of class`lme`

, containing the models for every molecule modelling group effect.`modelTimeGroup`

A

`list`

of class`lme`

, containing the models for every molecule modelling time and group interaction effect.`type`

An object of class

`character`

, describing the test performed.`experiment`

An object of class

`character`

describing the model used to perform differential expression analysis.

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