parse_text_predictions: Parse text-format model predictions into a named list

In mLLMCelltype: Cell Type Annotation Using Large Language Models

Parse text-format model predictions into a named list

Description

Handles multiple output formats from LLMs:

• "cluster_id: cell_type" format

• "1. cell_type" numeric index format

• Positional fallback (line index maps to cluster index)

Usage

parse_text_predictions(model_preds, all_clusters = NULL)

Arguments

model_preds	Character vector of prediction lines from a model
all_clusters	Optional character vector of cluster IDs for positional fallback

Value

Named list mapping cluster_id -> cell_type

mLLMCelltype documentation built on May 11, 2026, 9:06 a.m.