API for mLLMCelltype
Cell Type Annotation Using Large Language Models
| Global functions | |
|---|---|
| .onAttach | Man page Source code |
| .onLoad | Man page Source code |
| AnthropicProcessor | Man page |
| BaseAPIProcessor | Man page |
| CacheManager | Man page |
| DeepSeekProcessor | Man page |
| GeminiProcessor | Man page |
| GrokProcessor | Man page |
| MinimaxProcessor | Man page |
| OpenAIProcessor | Man page |
| OpenRouterProcessor | Man page |
| QwenProcessor | Man page |
| StepFunProcessor | Man page |
| UnifiedLogger | Man page |
| ZhipuProcessor | Man page |
| annotate_cell_types | Man page Source code |
| calculate_simple_consensus | Man page Source code |
| check_consensus | Man page Source code |
| clean_annotation | Man page Source code |
| combine_results | Man page Source code |
| compare_model_predictions | Man page Source code |
| configure_logger | Man page Source code |
| create_annotation_prompt | Man page Source code |
| create_consensus_check_prompt | Man page Source code |
| create_discussion_prompt | Man page Source code |
| create_initial_discussion_prompt | Man page Source code |
| create_standardization_prompt | Man page Source code |
| custom_providers | Man page |
| execute_consensus_check | Man page Source code |
| extract_cluster_genes_for_discussion | Source code |
| extract_cluster_item_genes | Source code |
| extract_discussion_cell_type | Source code |
| extract_labeled_value | Man page Source code |
| facilitate_cluster_discussion | Man page Source code |
| filter_valid_responses | Man page Source code |
| find_majority_prediction | Man page Source code |
| get_api_key | Man page Source code |
| get_initial_predictions | Man page Source code |
| get_logger | Man page Source code |
| get_model_response | Man page Source code |
| get_provider | Man page Source code |
| identify_controversial_clusters | Man page Source code |
| initialize_logger | Man page Source code |
| interactive_consensus_annotation | Man page Source code |
| is_error_response | Source code |
| list_custom_models | Man page Source code |
| list_custom_providers | Man page Source code |
| log_debug | Man page Source code |
| log_error | Man page Source code |
| log_info | Man page Source code |
| log_warn | Man page Source code |
| logging_functions | Man page |
| mLLMCelltype | Man page |
| mLLMCelltype-package | Man page |
| mllmcelltype_cache_dir | Man page Source code |
| mllmcelltype_clear_cache | Man page Source code |
| normalize_annotation | Man page Source code |
| normalize_cluster_gene_list | Man page Source code |
| parse_consensus_response | Man page Source code |
| parse_flexible_format | Man page Source code |
| parse_standard_format | Man page Source code |
| parse_text_predictions | Man page Source code |
| prepare_models_list | Man page Source code |
| print_consensus_summary | Man page Source code |
| process_anthropic | Man page Source code |
| process_controversial_clusters | Man page Source code |
| process_custom | Man page Source code |
| process_deepseek | Man page Source code |
| process_gemini | Man page Source code |
| process_grok | Man page Source code |
| process_minimax | Man page Source code |
| process_openai | Man page Source code |
| process_openrouter | Man page Source code |
| process_qwen | Man page Source code |
| process_stepfun | Man page Source code |
| process_zhipu | Man page Source code |
| register_custom_model | Man page Source code |
| register_custom_provider | Man page Source code |
| resolve_provider_base_url | Man page Source code |
| select_best_prediction | Man page Source code |
| standardize_cell_type_names | Man page Source code |
