standardize_cell_type_names: Standardize cell type names using a language model

In mLLMCelltype: Cell Type Annotation Using Large Language Models

Standardize cell type names using a language model

Description

This function takes predictions from multiple models and standardizes the cell type nomenclature to ensure consistent naming across different models' outputs.

Usage

standardize_cell_type_names(
  predictions,
  models,
  api_keys,
  standardization_model = "claude-sonnet-4-6",
  base_urls = NULL
)

Details

1. With provider names as keys: list("openai" = "sk-...", "anthropic" = "sk-ant-...", "openrouter" = "sk-or-...")

2. With model names as keys: list("gpt-5.5" = "sk-...", "claude-sonnet-4-6" = "sk-ant-...")

mLLMCelltype documentation built on May 11, 2026, 9:06 a.m.