Files in mLLMCelltype
Cell Type Annotation Using Large Language Models
.Rinstignore
MD5
NEWS.md
NAMESPACE
DESCRIPTION
LICENSE
R/unified_logger.R
R/base_api_processor.R
R/process_deepseek.R
R/openai_processor.R
R/cell_type_annotation.R
R/custom_model_manager.R
R/get_provider.R
R/process_qwen.R
R/gemini_processor.R
R/url_utils.R
R/process_gemini.R
R/grok_processor.R
R/process_grok.R
R/process_minimax.R
R/check_consensus.R
R/process_zhipu.R
R/prompt_templates.R
R/process_openai.R
R/process_openrouter.R
R/qwen_processor.R
R/zhipu_processor.R
R/print_consensus_summary.R
R/stepfun_processor.R
R/api_utils.R
R/process_stepfun.R
R/cache_utils.R
R/anthropic_processor.R
R/cache_manager.R
R/facilitate_cluster_discussion.R
R/response_validation_utils.R
R/zzz.R
R/deepseek_processor.R
R/openrouter_processor.R
R/consensus_annotation.R
R/process_anthropic.R
R/compare_model_predictions.R
R/minimax_processor.R
R/get_model_response.R
inst/README.md
inst/CITATION
inst/doc/consensus-principles.Rmd
inst/doc/usage-tutorial.Rmd
inst/doc/advanced-features.html
inst/doc/why-consensus.R
inst/doc/why-consensus.html
inst/doc/contributing-guide.Rmd
inst/doc/vs-single-agent.R
inst/doc/getting-started.R
inst/doc/faq.html
inst/doc/version-history.html
inst/doc/advanced-features.Rmd
inst/doc/installation.R
inst/doc/installation.Rmd
inst/doc/consensus-principles.R
inst/doc/consensus-principles.html
inst/doc/contributing-guide.R
inst/doc/faq.Rmd
inst/doc/contributing-guide.html
inst/doc/why-consensus.Rmd
inst/doc/usage-tutorial.R
inst/doc/faq.R
inst/doc/usage-tutorial.html
inst/doc/mLLMCelltype.R
inst/doc/mLLMCelltype.html
inst/doc/introduction.html
inst/doc/vs-single-agent.html
inst/doc/vs-single-agent.Rmd
inst/doc/getting-started.html
inst/doc/advanced-features.R
inst/doc/version-history.Rmd
inst/doc/mLLMCelltype.Rmd
inst/doc/introduction.R
inst/doc/getting-started.Rmd
inst/doc/installation.html
inst/doc/introduction.Rmd
inst/doc/version-history.R
inst/extdata/Cat_Heart_markers.csv
build/vignette.rds
build/partial.rdb
tests/testthat.R
tests/testthat/test-cache-cran-compliance.R
tests/testthat/helper-integration.R
tests/testthat/test-input-contract-consistency.R
tests/testthat/test-cache-simple-api.R
tests/testthat/test-cache-mock.R
tests/testthat/test-cache-real-api.R
tests/testthat/test-cache-core.R
tests/testthat/test-cache-performance.R
tests/performance/test_api_rate_limits.R
vignettes/consensus-principles.Rmd
vignettes/usage-tutorial.Rmd
vignettes/contributing-guide.Rmd
vignettes/advanced-features.Rmd
vignettes/installation.Rmd
vignettes/faq.Rmd
vignettes/why-consensus.Rmd
vignettes/vs-single-agent.Rmd
vignettes/version-history.Rmd
vignettes/mLLMCelltype.Rmd
vignettes/getting-started.Rmd
vignettes/introduction.Rmd
man/custom_providers.Rd
man/process_gemini.Rd
man/StepFunProcessor.Rd
man/select_best_prediction.Rd
man/standardize_cell_type_names.Rd
man/process_anthropic.Rd
man/print_consensus_summary.Rd
man/logging_functions.Rd
man/create_initial_discussion_prompt.Rd
man/process_qwen.Rd
man/create_consensus_check_prompt.Rd
man/mllmcelltype_clear_cache.Rd
man/get_provider.Rd
man/get_model_response.Rd
man/initialize_logger.Rd
man/OpenRouterProcessor.Rd
man/list_custom_models.Rd
man/create_discussion_prompt.Rd
man/OpenAIProcessor.Rd
man/BaseAPIProcessor.Rd
man/create_annotation_prompt.Rd
man/get_initial_predictions.Rd
man/mllmcelltype_cache_dir.Rd
man/filter_valid_responses.Rd
man/dot-onAttach.Rd
man/list_custom_providers.Rd
man/register_custom_model.Rd
man/process_custom.Rd
man/process_minimax.Rd
man/execute_consensus_check.Rd
man/get_logger.Rd
man/CacheManager.Rd
man/compare_model_predictions.Rd
man/process_stepfun.Rd
man/process_openrouter.Rd
man/UnifiedLogger.Rd
man/resolve_provider_base_url.Rd
man/facilitate_cluster_discussion.Rd
man/get_api_key.Rd
man/DeepSeekProcessor.Rd
man/combine_results.Rd
man/interactive_consensus_annotation.Rd
man/process_zhipu.Rd
man/identify_controversial_clusters.Rd
man/parse_flexible_format.Rd
man/process_deepseek.Rd
man/find_majority_prediction.Rd
man/mLLMCelltype-package.Rd
man/parse_text_predictions.Rd
man/QwenProcessor.Rd
man/clean_annotation.Rd
man/normalize_cluster_gene_list.Rd
man/ZhipuProcessor.Rd
man/AnthropicProcessor.Rd
man/configure_logger.Rd
man/normalize_annotation.Rd
man/extract_labeled_value.Rd
man/dot-onLoad.Rd
man/parse_consensus_response.Rd
man/GeminiProcessor.Rd
man/GrokProcessor.Rd
man/check_consensus.Rd
man/process_openai.Rd
man/process_grok.Rd
man/create_standardization_prompt.Rd
man/parse_standard_format.Rd
man/MinimaxProcessor.Rd
man/calculate_simple_consensus.Rd
man/annotate_cell_types.Rd
man/process_controversial_clusters.Rd
man/register_custom_provider.Rd
man/prepare_models_list.Rd
man/figures/png/fig8_uncertainty_violins.png
man/figures/png/fig1_cell_types.png
