estimate_autotheta_1subpop_genotypes: Estimate autosomal theta from genotypes

In malan: MAle Lineage ANalysis

Description

Estimate autosomal theta for one subpopulation given a sample of genotypes.

Usage

estimate_autotheta_1subpop_genotypes(genotypes, return_estimation_info = FALSE)

Arguments

genotypes	Matrix of genotypes: two columns (allele1 and allele2) and a row per individual
return_estimation_info	Whether to return the quantities used to estimate theta

Details

Assumes that pedigrees_all_populate_autosomal() was used first to populate autosomal genotypes.

Value

List:

• theta

  • estimate: Vector of length 1 containing estimate of theta or NA if it could not be estimated

  • error: true if an error happened, false otherwise

  • details: contains description if an error happened

  • estimation_info: If return_estimation_info = true: a list with information used to estimate theta. Else NULL.

malan documentation built on July 2, 2020, 3:01 a.m.