get_haplotypes_individuals: Get haplotype matrix from list of individuals
In malan: MAle Lineage ANalysis
Description
Usage
Arguments
Value
See Also
Examples
Description
Requires that haplotypes are first populated, e.g.
with pedigrees_all_populate_haplotypes(),
pedigrees_all_populate_haplotypes_custom_founders(), or
pedigrees_all_populate_haplotypes_ladder_bounded().
Usage
1
get_haplotypes_individuals(individuals)
Arguments
individuals
Individuals to get haplotypes for.
Value
Matrix of haplotypes where row i is the haplotype of individuals[[i]].
See Also
Examples
1
2
3
4
sim <- sample_geneology(100, 10)
peds <- build_pedigrees(sim$population)
pedigrees_all_populate_haplotypes(peds, 2, c(1, 1))
get_haplotypes_individuals(sim$end_generation_individuals)
malan documentation built on July 2, 2020, 3:01 a.m.
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Description Usage Arguments Value See Also Examples
Description
Requires that haplotypes are first populated, e.g.
with pedigrees_all_populate_haplotypes(),
pedigrees_all_populate_haplotypes_custom_founders(), or
pedigrees_all_populate_haplotypes_ladder_bounded().
Usage
1 | get_haplotypes_individuals(individuals)
|
Arguments
individuals |
Individuals to get haplotypes for. |
Value
Matrix of haplotypes where row i is the haplotype of individuals[[i]].
See Also
Examples
1 2 3 4 | sim <- sample_geneology(100, 10)
peds <- build_pedigrees(sim$population)
pedigrees_all_populate_haplotypes(peds, 2, c(1, 1))
get_haplotypes_individuals(sim$end_generation_individuals)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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