mapfit: A Tool for PH/MAP Parameter Estimation
Version 0.9.7

Estimation methods for phase-type distribution (PH) and Markovian arrival process (MAP) from empirical data (point and grouped data) and density function.

Browse man pages Browse package API and functions Browse package files

AuthorHiroyuki Okamura
Date of publication2015-03-24 18:15:53
MaintainerHiroyuki Okamura <okamu@rel.hiroshima-u.ac.jp>
LicenseGPL (>= 2)
Version0.9.7
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("mapfit")

Man pages

BCpAug89: Packet Trace Data
cf1: Canonical Form 1 for Phase-Type (PH) Distribution
cf1-class: Class of canonical form 1 (PH distribution)
erhmm: ER-HMM (HMM with Erlang outputs)
erhmm-class: Class of ER-HMM
herlang: Hyper-Erlang Distribution
herlang-class: Class of hyper Erlang
map: Markovian Arrival Process (MAP)
map-class: Classes of MAP
mapfit.group: MAP fitting with grouped data
mapfit-package: PH/MAP parameter estimation tool
mapfit.point: MAP fitting with time point data
map.mmoment: Moments for Markovian arrival pcess (MAP)
ph: Phase-Type (PH) Distribution
ph-class: Class of general PH distributions
phfit.3mom: PH fitting with three moments
phfit.density: PH fitting with density function
phfit.group: PH fitting with grouped data
phfit.point: PH fitting with point data
ph.moment-method: Moments for Phase-Type (PH) Distribution

Functions

BCpAug89 Man page
cf1 Man page Source code
cf1-class Man page
cf1.param Source code
cf1.param.linear Source code
cf1.param.power Source code
cf1.sample Source code
convolutionofPH Source code
ctmc.st Source code
deformula.weight Source code
dherlang Man page Source code
diag.padding.zero Source code
dph Man page Source code
emfit Source code
emfit.df Source code
emfit.estep Source code
emfit.init Source code
emfit.mstep Source code
emfit.options Source code
emfit.print Source code
emfit.verbose Source code
erhmm Man page Source code
erhmm-class Man page
erhmm.param.kmeans Source code
gmmpp Man page Source code
gmmpp-class Man page
gmmpp.param.kmeans Source code
gmmpp.tridiag Source code
herlang Man page Source code
herlang-class Man page
herlang.param.kmeans Source code
herlang.shape.all Source code
herlang.shape.decrement Source code
herlang.shape.increment Source code
herlang.shape.ipart Source code
hypoerlang Source code
isPH2 Source code
isreal Source code
lowerbound Source code
map Man page Source code
map-class Man page
map.acf Man page Source code
map.bidiag Source code
map.jmoment Man page Source code
map.mmoment Man page Source code
map.param.kmeans Source code
map.tridiag Source code
mapfit Man page
mapfit-package Man page
mapfit.erhmm Source code
mapfit.erhmm.all Source code
mapfit.erhmm.increment Source code
mapfit.erhmm.options Source code
mapfit.erhmm.structure.full Source code
mapfit.erhmm.time Source code
mapfit.erhmm.verbose Source code
mapfit.gen Source code
mapfit.gen.options Source code
mapfit.gen.verbose Source code
mapfit.gmmpp Source code
mapfit.group Man page Source code
mapfit.group.data.frame Source code
mapfit.mean Source code
mapfit.point Man page Source code
mapfit.time.data.frame Source code
matching3EC Source code
matching3PH Source code
matching3PH2 Source code
mean Source code
mexp Source code
mexp.kryvec Source code
mexp.options Source code
mexp.pade Source code
mexp.uniform Source code
mexp.unifseq Source code
mexp.unifvec Source code
mixtureofPH Source code
mm.bobbio05 Source code
mmpp Man page Source code
mmpp.tridiag Source code
mpow Source code
msolve Source code
onLoad Source code
ph Man page Source code
ph-class Man page
ph.bidiag Source code
ph.mean Man page Source code
ph.moment Man page Source code
ph.moment,ANY,herlang-method Man page
ph.moment,ANY,ph-method Man page
ph.moment-method Man page
ph.param.random Source code
ph.sample Source code
ph.tridiag Source code
ph.var Man page Source code
pherlang Man page Source code
phfit Man page
phfit.3mom Man page Source code
phfit.cf1 Source code
phfit.cf1.options Source code
phfit.cf1.verbose Source code
phfit.density Man page Source code
phfit.gen Source code
phfit.gen.options Source code
phfit.gen.verbose Source code
phfit.group Man page Source code
phfit.group.data.frame Source code
phfit.herlang Source code
phfit.herlang.all Source code
phfit.herlang.increment Source code
phfit.herlang.options Source code
phfit.herlang.verbose Source code
phfit.point Man page Source code
phfit.time.data.frame Source code
pph Man page Source code
print.mapfit.result Source code
print.phfit.result Source code
rherlang Man page Source code
rph Man page Source code
upperbound Source code

Files

src
src/Makevars
src/R_estep.cc
src/R_common.cc
src/R_mstep.cc
src/scimatrix
src/scimatrix/blas_wrap
src/scimatrix/blas_wrap/lapack.h
src/scimatrix/blas_wrap/dgesv.c
src/scimatrix/blas_wrap/dgesv.h
src/scimatrix/blas_wrap/myblas.h
src/scimatrix/blas_wrap/dpotrf.h
src/scimatrix/blas_wrap/dggglm.c
src/scimatrix/blas_wrap/dkron.c
src/scimatrix/blas_wrap/dggglm.h
src/scimatrix/blas_wrap/blas.h
src/scimatrix/blas_wrap/blas.c
src/scimatrix/blas_wrap/dpotrf.c
src/scimatrix/blas_wrap/myblas.c
src/scimatrix/blas_wrap/lapack.c
src/scimatrix/matrix
src/scimatrix/matrix/blas_cscmatrix.cc
src/scimatrix/matrix/blas_dmatrix.cc
src/scimatrix/matrix/blas_csrmatrix.cc
src/scimatrix/matrix/blas_vector.cc
src/scimatrix/matrix/blas_matrix.cc
src/scimatrix/matrix/blas_coomatrix.cc
src/scimatrix/spblas_wrap
src/scimatrix/spblas_wrap/myspblas.h
src/scimatrix/spblas_wrap/spblas.h
src/scimatrix/spblas_wrap/arnoldi.c
src/scimatrix/spblas_wrap/myspblas.c
src/scimatrix/spblas_wrap/dspkron.c
src/scimatrix/spblas_wrap/arnoldi.h
src/scimatrix/spblas_wrap/spblas.c
src/scimatrix/include
src/scimatrix/include/sci_csrmatrix.hh
src/scimatrix/include/sci_dcgnr.hh
src/scimatrix/include/sci_blas.hh
src/scimatrix/include/sci_cscmatrix.hh
src/scimatrix/include/sci_range.hh
src/scimatrix/include/sci_coomatrix.hh
src/scimatrix/include/sci_spmatrix.hh
src/scimatrix/include/sci_matrix.hh
src/scimatrix/include/sci_array.hh
src/scimatrix/include/sci_vector.hh
src/scimatrix/include/sci_spblas.hh
src/R_mexp.cc
src/mexp
src/mexp/src
src/mexp/src/mexp_pade.cc
src/mexp/src/mexpi_unif_thread.cc
src/mexp/src/mpow.cc
src/mexp/src/mexp_unif_thread.cc
src/mexp/src/mexpi_unif.cc
src/mexp/src/mexpc_unif.cc
src/mexp/src/poisson.cc
src/mexp/src/mexp_krylov.cc
src/mexp/src/mexp_unif.cc
src/mexp/src/mexpi_krylov.cc
src/mexp/src/unif.cc
src/mexp/src/gs.cc
src/mexp/src/poisson.h
src/mexp/src/Cpoisson.c
src/mexp/src/gth.cc
src/mexp/include
src/mexp/include/poisson.hh
src/mexp/include/mexp.hh
src/R_common.h
src/allheader.h
src/init.c
src/mapfitlib
src/mapfitlib/src
src/mapfitlib/src/gauss_inte.h
src/mapfitlib/src/erf.c
src/mapfitlib/src/gamma.c
src/mapfitlib/src/phase_erlang_mstep.cc
src/mapfitlib/src/phase_erlang_estep.cc
src/mapfitlib/src/phase_estep.cc
src/mapfitlib/src/erf.h
src/mapfitlib/src/hmm_mstep.cc
src/mapfitlib/src/pgamma.h
src/mapfitlib/src/hmm_estep.cc
src/mapfitlib/src/pgamma.c
src/mapfitlib/src/map_mstep.cc
src/mapfitlib/src/map_estep.cc
src/mapfitlib/src/phase_mstep.cc
src/mapfitlib/src/annealing.cc
src/mapfitlib/src/gauss_inte.c
src/mapfitlib/src/pnormal.h
src/mapfitlib/src/gmmpp.cc
src/mapfitlib/src/pnormal.c
src/mapfitlib/src/gamma.h
src/mapfitlib/src/map_blas.cc
src/mapfitlib/src/erlang.cc
src/mapfitlib/src/erlang.hh
src/mapfitlib/include
src/mapfitlib/include/phfit.hh
src/mapfitlib/include/mapfit.hh
NAMESPACE
data
data/BCpAug89.RData
R
R/model_cf1.R
R/AllClasses.R
R/fit_mapfit_gmmpp.R
R/data_mapdata.R
R/fit_mapfit.R
R/fit_phfit_herlang.R
R/fit_phfit_gen.R
R/model_herlang.R
R/model_ph.R
R/fit_emfit.R
R/fit_mapfit_erhmm.R
R/model_erhmm.R
R/fit_phfit_cf1.R
R/fit_phfit_mm_osogami.R
R/phsrm.R
R/util_mexp.R
R/common.R
R/fit_phfit.R
R/util_weight.R
R/model_gmmpp.R
R/fit_phfit_mm.R
R/data_phdata.R
R/model_map.R
R/util_herlang_shape.R
R/fit_mapfit_gen.R
R/zzz.R
R/fit_phfit_mm_bobbio.R
MD5
DESCRIPTION
man
man/ph-class.Rd
man/ph.moment-method.Rd
man/phfit.group.Rd
man/map.Rd
man/mapfit.group.Rd
man/erhmm.Rd
man/map-class.Rd
man/phfit.point.Rd
man/ph.Rd
man/herlang.Rd
man/erhmm-class.Rd
man/BCpAug89.Rd
man/map.mmoment.Rd
man/mapfit.point.Rd
man/phfit.3mom.Rd
man/cf1.Rd
man/phfit.density.Rd
man/herlang-class.Rd
man/mapfit-package.Rd
man/cf1-class.Rd
mapfit documentation built on May 19, 2017, 1:32 p.m.