marked: Mark-Recapture Analysis for Survival and Abundance Estimation

Functions for fitting various models to capture-recapture data including mixed-effects Cormack-Jolly-Seber(CJS) and multistate models and the multi-variate state model structure for survival estimation and POPAN structured Jolly-Seber models for abundance estimation. There are also Hidden Markov model (HMM) implementations of CJS and multistate models with and without state uncertainty and a simulation capability for HMM models.

Package details

AuthorJeff Laake <jefflaake@gmail.com>, Devin Johnson <devin.johnson@noaa.gov>, Paul Conn <paul.conn@noaa.gov>, example for simHMM from Jay Rotella
MaintainerJeff Laake <jefflaake@gmail.com>
LicenseGPL (>= 2)
Version1.2.6
Package repositoryView on CRAN
Installation Install the latest version of this package by entering the following in R:
install.packages("marked")

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marked documentation built on Dec. 9, 2019, 9:06 a.m.