Files in marked
Mark-Recapture Analysis for Survival and Abundance Estimation
MD5
NEWS
NAMESPACE
DESCRIPTION
R/fix.parameters.r
R/js.r
R/proc.formula.r
R/Observation_functions.r
R/setup.parameters.R
R/set.fixed.R
R/make.design.data.R
R/probitCJS.R
R/cjs.hessian.r
R/cjs.accumulate.R
R/set_mvms.r
R/extract.fcts.r
R/valid.parameters.R
R/mixed.model.r
R/cjs.R
R/merge.design.covariates.r
R/simHMM.r
R/create.links.r
R/RHMMLikelihood.r
R/convert.link.to.real.r
R/hmmDemo.r
R/InitialDistribution_functions.r
R/setup.model.R
R/mscjs.r
R/summary.fcts.R
R/process.data.R
R/splitCH.R
R/compute.real.R
R/deriv.inverse.link.R
R/coef.r
R/scale.r
R/admbutils.R
R/simplify.r
R/smsld_tmb.r
R/cjs.initial.R
R/HMMutilities.r
R/mvmscjs_tmb.R
R/predict.crm.r
R/mscjs_tmb.r
R/js.hessian.R
R/Transition_functions.r
R/HMMLikelihood.r
R/marked-package.R
R/utility.R
R/cjs.lnl.r
R/omega.r
R/js.lnl.r
R/crm.wrapper.R
R/hsmm2hmm.r
R/zzz.R
R/inverse.link.R
R/print.crm.r
R/process.ch.R
R/create.dmdf.R
R/mvmscjs.R
R/msld_tmb.r
R/js.accumulate.R
R/cjs_tmb.R
R/set.initial.r
R/crm.R
R/create.dm.R
src/cjs2tldmat.f
src/Makevars.win
src/Makevars
src/bayesCR.cpp
src/msgamma.f
src/init.c
src/mvmsdmat.f
src/cjs.f
src/hmm_like.f
src/ums2dmat.f
src/cjsdmat.f
src/cjs1tlgam.f
src/cjs2tlgam.f
src/msdmat.f
src/ms2gamma.f
src/umsdmat.f
src/cjs1tldmat.f
src/cjsgamma.f
inst/parameters.txt
inst/mvms_tmb.cpp
inst/smsld_tmb.cpp
inst/multistate.tpl
inst/xmodelm5.cpp
inst/df1b2gh.cpp
inst/df1b2ghmult.cpp
inst/cjsre_tmb.cpp
inst/minfil.cpp
inst/cjs_tmb.cpp
inst/cjs_reml.tpl
inst/cjs.tpl
inst/cjsre.tpl
inst/multistate_tmb.cpp
inst/CITATION
inst/README.txt
inst/models.txt
inst/msld_tmb.cpp
inst/mvms.tpl
inst/doc/markedVignette.Rmd
inst/doc/markedVignette.html
inst/doc/markedVignette.R
demo/tests.r
demo/00Index
build/vignette.rds
vignettes/markedVignette.Rmd
vignettes/markedWriteUpBib.bib
data/skagit.rda
data/dipper.rda
data/sealions.rda
data/Paradise_shelduck.rda
data/tagloss.rda
data/mstrata.rda
man/mvmscjs.Rd
man/cjs_admb.Rd
man/mscjs.Rd
man/backward_prob.Rd
man/dmat_hsmm2hmm.Rd
man/valid.parameters.Rd
man/probitCJS.Rd
man/mscjs_tmb.Rd
man/compute_matrices.Rd
man/set.initial.Rd
man/omega.Rd
man/cjs_delta.Rd
man/setup_tmb.Rd
man/mvmscjs_tmb.Rd
man/process.ch.Rd
man/initiate_pi.Rd
man/compute_real.Rd
man/deriv_inverse.link.Rd
man/create.dm.Rd
man/skagit.Rd
man/fix.parameters.Rd
man/mixed.model.admb.Rd
man/smsld_tmb.Rd
man/convert.link.to.real.Rd
man/resight.matrix.Rd
man/hsmm2hmm.Rd
man/js.lnl.Rd
man/simHMM.Rd
man/js.hessian.Rd
man/splitCH.Rd
man/cjs_tmb.Rd
man/HMMLikelihood.Rd
man/set_mvms.Rd
man/cjs_gamma.Rd
man/setup.parameters.Rd
man/mvms_dmat.Rd
man/crm.Rd
man/mstrata.Rd
man/js.Rd
man/proc.form.Rd
man/js.accumulate.Rd
man/make.design.data.Rd
man/sealions.Rd
man/cjs.initial.Rd
man/predict.crm.Rd
man/process.data.Rd
man/set_scale.Rd
man/local_decode.Rd
man/R_HMMLikelihood.Rd
man/mvms_design_data.Rd
man/create.dmdf.Rd
man/Phi.mean.Rd
man/hmmDemo.Rd
man/setup_admb.Rd
man/crm.wrapper.Rd
man/create.fixed.matrix.Rd
man/coef.crm.Rd
man/tagloss.Rd
man/print.crm.Rd
man/set.fixed.Rd
man/msld_tmb.Rd
man/cjs.hessian.Rd
man/cjs.accumulate.Rd
man/function.wrapper.Rd
man/create.links.Rd
man/Paradise_shelduck.Rd
man/merge_design.covariates.Rd
man/cjs.lnl.Rd
man/setup.model.Rd
man/inverse.link.Rd
man/global_decode.Rd
man/print.crmlist.Rd
man/dipper.Rd
