API for marked
Mark-Recapture Analysis for Survival and Abundance Estimation

Global functions
.onAttach	Source code
.onUnload	Source code
HMMLikelihood	Man page Source code
Paradise_shelduck	Man page
Phi.boxplot	Man page Source code
Phi.mean	Man page Source code
R_HMMLikelihood	Man page Source code
accumulate_data	Man page Source code
add.dummy.data	Source code
backward_prob	Man page Source code
cjs.accumulate	Man page Source code
cjs.hessian	Man page Source code
cjs.initial	Man page Source code
cjs.lnl	Man page Source code
cjs1tl_dmat	Source code
cjs1tl_gamma	Source code
cjs2tl_dmat	Source code
cjs2tl_gamma	Source code
cjs_admb	Man page Source code
cjs_delta	Man page Source code
cjs_dmat	Man page Source code
cjs_gamma	Man page Source code
cjs_tmb	Man page Source code
coef.crm	Man page Source code
collapseCH	Man page Source code
compute_matrices	Man page Source code
compute_real	Man page Source code
convert.link.to.real	Man page Source code
create.base.dmdf	Source code
create.dm	Man page Source code
create.dmdf	Man page Source code
create.dml	Man page Source code
create.fixed.matrix	Man page Source code
create.links	Man page Source code
create.model.list	Man page Source code
crm	Man page Source code
crm.wrapper	Man page Source code
crmlist_fromfiles	Man page Source code
deriv.inverse.link	Man page
deriv_inverse.link	Man page Source code
dipper	Man page
dmat_hsmm2hmm	Man page Source code
fix.parameters	Man page Source code
function.wrapper	Man page Source code
fx.aic	Man page Source code
fx.par.count	Man page Source code
global_decode	Man page Source code
hmm.lnl	Man page Source code
hmmDemo	Man page Source code
hsmm2hmm	Man page Source code
initiate_pi	Man page Source code
inverse.link	Man page Source code
js	Man page Source code
js.accumulate	Man page Source code
js.hessian	Man page Source code
js.lnl	Man page Source code
load.model	Man page Source code
local_decode	Man page Source code
loglikelihood	Man page Source code
make.design.data	Man page
mcmc_mode	Man page Source code
merge.design.covariates	Man page
merge_design.covariates	Man page
mixed.model	Man page Source code
mixed.model.admb	Man page Source code
mixed.model.dat	Man page Source code
model.table	Man page Source code
ms2_gamma	Man page Source code
ms_dmat	Man page Source code
ms_gamma	Man page Source code
mscjs	Man page Source code
mscjs_tmb	Man page Source code
msld_tmb	Man page Source code
mstrata	Man page
mvms_design_data	Man page Source code
mvms_dmat	Man page Source code
mvms_gamma	Source code
mvms_sup	Source code
mvmscjs	Man page Source code
mvmscjs_delta	Man page Source code
mvmscjs_tmb	Man page Source code
naive.survival	Man page Source code
omega	Man page Source code
p.boxplot	Man page Source code
p.mean	Man page Source code
predict.crm	Man page Source code
print.crm	Man page Source code
print.crmlist	Man page Source code
print.marked.version	Source code
probitCJS	Man page Source code
proc.form	Man page Source code
process.ch	Man page Source code
process.data	Man page Source code
ps	Man page
reSplit	Source code
reals	Man page Source code
reindex	Man page Source code
rerun_crm	Man page Source code
resight.matrix	Man page Source code
scale_dm	Man page Source code
scale_par	Man page Source code
sealions	Man page
set.fixed	Man page Source code
set.initial	Man page Source code
set_mvms	Man page Source code
set_scale	Man page Source code
setup.model	Man page Source code
setup.parameters	Man page Source code
setupHMM	Man page Source code
setup_admb	Man page Source code
setup_re	Source code
setup_tmb	Man page Source code
simHMM	Man page Source code
simplify_ddl	Source code
simplify_indices	Source code
skagit	Man page
smsld_tmb	Man page Source code
splitCH	Man page Source code
tagloss	Man page
ums2_dmat	Man page Source code
ums_dmat	Man page Source code
unscale_par	Man page Source code
valid.parameters	Man page