dir.MGRAST: List directory of projects

In matR: Metagenomics Analysis Tools

Description

Get full or partial directory listing of projects, with minimal or detailed metadata per project.

Usage

dir.MGRAST(from, to, length.out=0, ..., quiet=TRUE)

Arguments

from	starting index for returned results (numeric)
to	ending index for returned results (numeric)
length.out	number of results to return; default zero means all (numeric)
...	arguments to call.MGRAST()
quiet	suppress messages and warnings? (logical)

Details

Complete technical documentation is forthcoming. For the current preliminary release, please refer to the examples provided.

Value

A data.frame of project information.

Author(s)

Daniel T. Braithwaite

See Also

search.MGRAST, metadata.character, MGRASTer::call.MGRAST

Examples

## Not run: 
####  names of all public projects
dir.MGRAST()$name

####  ids of all public projects
rownames (dir.MGRAST())

####  investigators who have contributed public projects
unique (dir.MGRAST()$pi)

####  first 25 projects submitted to MG-RAST
dir.MGRAST (len=25, order="id")

####  detailed information about them
names (dir.MGRAST(len=25, order="id", verbosity="verbose"))

####  quick look at public projects
strtrim (dir.MGRAST (verbosity="verbose")$description, 70)

## End(Not run)

####  relevant documentation for the underlying API call
doc.MGRAST (3, head=c('project','query','parameters','options'))

matR documentation built on May 2, 2019, 6:53 a.m.