BIOMmerge: Merge BIOM data
In matR: Metagenomics Analysis Tools
Description
Usage
Arguments
Details
Value
Author(s)
See Also
Examples
Description
Merge two objects of class biom, maintaining metadata and other class structure.
Usage
1
2
Arguments
x
an object (biom)
y
an object (biom)
...
unused
Details
Complete technical documentation is forthcoming.
For the current preliminary release, please refer
to the examples provided.
Value
A biom object resulting from merging x and y.
Author(s)
Daniel T. Braithwaite
See Also
Examples
1
2
3
4
5
6
7
#### merging requires only that all colnames be unique, so nonsense can be performed
merge (xx1, xx4)
#### a more likely example, based on applying different normalizations
aa <- transform (xx4 [,1:8], t_Threshold, t_Log)
bb <- transform (xx4 [,9:16], t_Threshold=list(entry.min=5), t_Log)
xx4_norm <- merge (aa, bb)
Example output
Loading required package: MGRASTer
MGRASTer (0.9 02e288)
Loading required package: BIOM.utils
BIOM.utils (0.9 dbcb27)
matR: metagenomics analysis tools for R (0.9.1)
mgm4440463.3
ABC transporters 10
ATP synthases 19
Acid stress 8
Adhesion 7
Alanine, serine, and glycine 42
Aminosugars 24
Anaerobic degradation of aromatic compounds 3
Arginine; urea cycle, polyamines 67
Aromatic amino acids and derivatives 37
Bacterial cytostatics, differentiation factors and antibiotics 0
Bacteriocins, ribosomally synthesized antibacterial peptides 2
Biologically active compounds in metazoan cell defence and differentiation 2
Biosynthesis of galactoglycans and related lipopolysacharides 44
Biosynthesis of phenylpropanoids 0
Biotin 26
Branched-chain amino acids 52
CO2 fixation 54
CRISPRs and associated hypotheticals 4
CRISPs 11
Capsular and extracellular polysacchrides 149
Carbohydrates 9
Carotenoid biosynthesis 4
Cell Division 30
Cell wall of Mycobacteria 22
Central carbohydrate metabolism 168
Chemotaxis, response regulators 0
Choline bitartrate degradation, putative 3
Chromosome Replication 3
Clustering-based subsystems 24
Coenzyme A 13
Coenzyme B 0
Coenzyme F420 0
Coenzyme M 0
Cold shock 0
Cytochrome biogenesis 16
D-tyrosyl-tRNA(Tyr) deacylase (EC 3.1.-.-) cluster 10
DNA metabolism 0
DNA polymerase III epsilon cluster 1
DNA recombination 12
DNA repair 149
DNA replication 177
DNA uptake, competence 22
Detection 18
Detoxification 12
Di- and oligosaccharides 130
Electron accepting reactions 17
Electron donating reactions 38
Electron transport and photophosphorylation 0
Fatty acid metabolic cluster 46
Fatty acids 60
Fermentation 41
Flagella protein? 0
Flagellar motility in Prokaryota 38
Folate and pterines 157
Gene Transfer Agent (GTA) 0
Glutamine, glutamate, aspartate, asparagine; ammonia assimilation 42
Glycoside hydrolases 8
Gram-Negative cell wall components 76
Gram-Positive cell wall components 18
Heat shock 34
Histidine Metabolism 6
Hypothetical Related to Dihydroorate Dehydrogenase 0
Hypothetical associated with RecF 8
Hypothetical in Lysine biosynthetic cluster 4
Hypothetical lipase related to Phosphatidate metabolism 3
Hypothetical protein possible functionally linked with Alanyl-tRNA synthetase 7
Inorganic sulfur assimilation 8
Invasion and intracellular resistance 5
Isoprenoid/cell wall biosynthesis: PREDICTED UNDECAPRENYL DIPHOSPHATE PHOSPHATASE 24
Isoprenoids 29
Lipid-derived mediators 0
Lipoic acid 0
Lysine Biosynthesis 0
Lysine, threonine, methionine, and cysteine 127
Metabolism of central aromatic intermediates 6
Methylamine utilization 11
Molybdopterin oxidoreductase 0
Monosaccharides 150
NAD and NADP 41
Nucleotidyl-phosphate metabolic cluster 16
One-carbon Metabolism 109
Organic acids 18
Organic sulfur assimilation 5
Osmotic stress 7
Oxidative stress 45
Pathogenicity islands 13
Peripheral pathways for catabolism of aromatic compounds 25
Periplasmic Stress 6
Phages, Prophages 161
Phosphate metabolism 8
Phospholipids 35
Plant Alkaloids 0
Plant Hormones 2
Plant-Prokaryote DOE project 412
Plasmid related functions 0
Polysaccharides 38
Probably GTP or GMP signaling related 16
Probably Pyrimidine biosynthesis-related 4
Probably Ybbk-related hypothetical membrane proteins 0
Probably organic hydroperoxide resistance related hypothetical protein 0
Programmed Cell Death and Toxin-antitoxin Systems 5
Proline and 4-hydroxyproline 18
Proteasome related clusters 0
Protein and nucleoprotein secretion system, Type IV 15
Protein biosynthesis 297
Protein degradation 71
Protein export? 15
Protein folding 36
Protein processing and modification 75
Protein secretion system, Type I 1
Protein secretion system, Type II 0
Protein secretion system, Type III 0
Protein secretion system, Type V 0
Protein secretion system, Type VI 7
Protein secretion system, Type VII (Chaperone/Usher pathway, CU) 0
Protein secretion system, Type VIII (Extracellular nucleation/precipitation pathway, ENP) 0
Protein translocation across cytoplasmic membrane 43
Proteolytic pathway 0
Purines 112
Putative GGDEF domain protein related to agglutinin secretion 0
Putative Isoquinoline 1-oxidoreductase subunit 0
Putative asociate of RNA polymerase sigma-54 factor rpoN 9
Putrescine/GABA utilization cluster-temporal,to add to SSs 0
Pyridoxine 24
Pyrimidines 92
Pyruvate kinase associated cluster 1
Quinone cofactors 9
Quorum sensing and biofilm formation 8
RNA processing and modification 183
Recombination related cluster 2
Regulation of virulence 40
Related to Menaquinone-cytochrome C reductase 0
Resistance to antibiotics and toxic compounds 117
Reverse electron transport 0
Riboflavin, FMN, FAD 15
Ribosomal Protein L28P relates to a set of uncharacterized proteins 21
Ribosome-related cluster 14
Sarcosine oxidase 0
Selenoproteins 14
Shiga toxin cluster 5
Siderophores 2
Sodium Ion-Coupled Energetics 12
Spore DNA protection 1
Sugar Phosphotransferase Systems, PTS 7
Sugar alcohols 28
Sulfatases and sulfatase modifying factor 1 (and a hypothetical) 2
Tetrapyrroles 31
Three hypotheticals linked to lipoprotein biosynthesis 6
TldD cluster 6
Toxins and superantigens 0
Transcription 66
Translation 20
Transposable elements 67
Triacylglycerols 6
Tricarboxylate transporter 0
Two related proteases 10
Uni- Sym- and Antiporters 8
alpha-proteobacterial cluster of hypotheticals 0
proteosome related 7
recX and regulatory cluster 1
tRNA sulfuration 2
Archaea 0
Bacteria 0
Eukaryota 0
mgm4440464.3
ABC transporters 15
ATP synthases 13
Acid stress 1
Adhesion 5
Alanine, serine, and glycine 43
Aminosugars 18
Anaerobic degradation of aromatic compounds 5
Arginine; urea cycle, polyamines 45
Aromatic amino acids and derivatives 23
Bacterial cytostatics, differentiation factors and antibiotics 0
Bacteriocins, ribosomally synthesized antibacterial peptides 1
Biologically active compounds in metazoan cell defence and differentiation 2
Biosynthesis of galactoglycans and related lipopolysacharides 58
Biosynthesis of phenylpropanoids 0
Biotin 14
Branched-chain amino acids 39
CO2 fixation 34
CRISPRs and associated hypotheticals 4
CRISPs 15
Capsular and extracellular polysacchrides 199
Carbohydrates 10
Carotenoid biosynthesis 0
Cell Division 27
Cell wall of Mycobacteria 18
Central carbohydrate metabolism 118
Chemotaxis, response regulators 0
Choline bitartrate degradation, putative 1
Chromosome Replication 2
Clustering-based subsystems 20
Coenzyme A 12
Coenzyme B 0
Coenzyme F420 0
Coenzyme M 0
Cold shock 0
Cytochrome biogenesis 15
D-tyrosyl-tRNA(Tyr) deacylase (EC 3.1.-.-) cluster 1
DNA metabolism 0
DNA polymerase III epsilon cluster 0
DNA recombination 5
DNA repair 130
DNA replication 158
DNA uptake, competence 26
Detection 10
Detoxification 13
Di- and oligosaccharides 130
Electron accepting reactions 18
Electron donating reactions 21
Electron transport and photophosphorylation 0
Fatty acid metabolic cluster 30
Fatty acids 41
Fermentation 27
Flagella protein? 0
Flagellar motility in Prokaryota 68
Folate and pterines 119
Gene Transfer Agent (GTA) 0
Glutamine, glutamate, aspartate, asparagine; ammonia assimilation 41
Glycoside hydrolases 3
Gram-Negative cell wall components 56
Gram-Positive cell wall components 35
Heat shock 28
Histidine Metabolism 24
Hypothetical Related to Dihydroorate Dehydrogenase 0
Hypothetical associated with RecF 5
Hypothetical in Lysine biosynthetic cluster 9
Hypothetical lipase related to Phosphatidate metabolism 2
Hypothetical protein possible functionally linked with Alanyl-tRNA synthetase 6
Inorganic sulfur assimilation 16
Invasion and intracellular resistance 5
Isoprenoid/cell wall biosynthesis: PREDICTED UNDECAPRENYL DIPHOSPHATE PHOSPHATASE 16
Isoprenoids 24
Lipid-derived mediators 0
Lipoic acid 3
Lysine Biosynthesis 0
Lysine, threonine, methionine, and cysteine 95
Metabolism of central aromatic intermediates 4
Methylamine utilization 12
Molybdopterin oxidoreductase 1
Monosaccharides 94
NAD and NADP 27
Nucleotidyl-phosphate metabolic cluster 17
One-carbon Metabolism 73
Organic acids 11
Organic sulfur assimilation 2
Osmotic stress 1
Oxidative stress 32
Pathogenicity islands 16
Peripheral pathways for catabolism of aromatic compounds 17
Periplasmic Stress 4
Phages, Prophages 162
Phosphate metabolism 4
Phospholipids 28
Plant Alkaloids 0
Plant Hormones 6
Plant-Prokaryote DOE project 318
Plasmid related functions 0
Polysaccharides 21
Probably GTP or GMP signaling related 13
Probably Pyrimidine biosynthesis-related 1
Probably Ybbk-related hypothetical membrane proteins 2
Probably organic hydroperoxide resistance related hypothetical protein 0
Programmed Cell Death and Toxin-antitoxin Systems 8
Proline and 4-hydroxyproline 7
Proteasome related clusters 0
Protein and nucleoprotein secretion system, Type IV 10
Protein biosynthesis 225
Protein degradation 35
Protein export? 22
Protein folding 29
Protein processing and modification 81
Protein secretion system, Type I 0
Protein secretion system, Type II 10
Protein secretion system, Type III 0
Protein secretion system, Type V 0
Protein secretion system, Type VI 11
Protein secretion system, Type VII (Chaperone/Usher pathway, CU) 0
Protein secretion system, Type VIII (Extracellular nucleation/precipitation pathway, ENP) 0
Protein translocation across cytoplasmic membrane 33
Proteolytic pathway 0
Purines 49
Putative GGDEF domain protein related to agglutinin secretion 0
Putative Isoquinoline 1-oxidoreductase subunit 0
Putative asociate of RNA polymerase sigma-54 factor rpoN 3
Putrescine/GABA utilization cluster-temporal,to add to SSs 0
Pyridoxine 17
Pyrimidines 41
Pyruvate kinase associated cluster 5
Quinone cofactors 3
Quorum sensing and biofilm formation 7
RNA processing and modification 151
Recombination related cluster 5
Regulation of virulence 15
Related to Menaquinone-cytochrome C reductase 0
Resistance to antibiotics and toxic compounds 95
Reverse electron transport 0
Riboflavin, FMN, FAD 6
Ribosomal Protein L28P relates to a set of uncharacterized proteins 16
Ribosome-related cluster 8
Sarcosine oxidase 0
Selenoproteins 11
Shiga toxin cluster 2
Siderophores 1
Sodium Ion-Coupled Energetics 3
Spore DNA protection 3
Sugar Phosphotransferase Systems, PTS 14
Sugar alcohols 28
Sulfatases and sulfatase modifying factor 1 (and a hypothetical) 1
Tetrapyrroles 39
Three hypotheticals linked to lipoprotein biosynthesis 0
TldD cluster 8
Toxins and superantigens 1
Transcription 56
Translation 13
Transposable elements 28
Triacylglycerols 0
Tricarboxylate transporter 5
Two related proteases 5
Uni- Sym- and Antiporters 5
alpha-proteobacterial cluster of hypotheticals 0
proteosome related 2
recX and regulatory cluster 0
tRNA sulfuration 4
Archaea 0
Bacteria 0
Eukaryota 0
mgm4441679.3
ABC transporters 196
ATP synthases 194
Acid stress 20
Adhesion 22
Alanine, serine, and glycine 452
Aminosugars 84
Anaerobic degradation of aromatic compounds 37
Arginine; urea cycle, polyamines 475
Aromatic amino acids and derivatives 324
Bacterial cytostatics, differentiation factors and antibiotics 0
Bacteriocins, ribosomally synthesized antibacterial peptides 6
Biologically active compounds in metazoan cell defence and differentiation 14
Biosynthesis of galactoglycans and related lipopolysacharides 81
Biosynthesis of phenylpropanoids 4
Biotin 140
Branched-chain amino acids 313
CO2 fixation 430
CRISPRs and associated hypotheticals 2
CRISPs 3
Capsular and extracellular polysacchrides 658
Carbohydrates 71
Carotenoid biosynthesis 0
Cell Division 244
Cell wall of Mycobacteria 40
Central carbohydrate metabolism 1475
Chemotaxis, response regulators 0
Choline bitartrate degradation, putative 22
Chromosome Replication 30
Clustering-based subsystems 226
Coenzyme A 51
Coenzyme B 1
Coenzyme F420 1
Coenzyme M 1
Cold shock 0
Cytochrome biogenesis 65
D-tyrosyl-tRNA(Tyr) deacylase (EC 3.1.-.-) cluster 9
DNA metabolism 2
DNA polymerase III epsilon cluster 17
DNA recombination 61
DNA repair 830
DNA replication 1086
DNA uptake, competence 102
Detection 159
Detoxification 58
Di- and oligosaccharides 806
Electron accepting reactions 83
Electron donating reactions 286
Electron transport and photophosphorylation 0
Fatty acid metabolic cluster 192
Fatty acids 280
Fermentation 337
Flagella protein? 0
Flagellar motility in Prokaryota 121
Folate and pterines 1091
Gene Transfer Agent (GTA) 0
Glutamine, glutamate, aspartate, asparagine; ammonia assimilation 548
Glycoside hydrolases 24
Gram-Negative cell wall components 213
Gram-Positive cell wall components 90
Heat shock 323
Histidine Metabolism 169
Hypothetical Related to Dihydroorate Dehydrogenase 1
Hypothetical associated with RecF 18
Hypothetical in Lysine biosynthetic cluster 31
Hypothetical lipase related to Phosphatidate metabolism 0
Hypothetical protein possible functionally linked with Alanyl-tRNA synthetase 62
Inorganic sulfur assimilation 61
Invasion and intracellular resistance 10
Isoprenoid/cell wall biosynthesis: PREDICTED UNDECAPRENYL DIPHOSPHATE PHOSPHATASE 72
Isoprenoids 185
Lipid-derived mediators 0
Lipoic acid 0
Lysine Biosynthesis 1
Lysine, threonine, methionine, and cysteine 1128
Metabolism of central aromatic intermediates 46
Methylamine utilization 151
Molybdopterin oxidoreductase 0
Monosaccharides 1006
NAD and NADP 134
Nucleotidyl-phosphate metabolic cluster 78
One-carbon Metabolism 630
Organic acids 188
Organic sulfur assimilation 25
Osmotic stress 54
Oxidative stress 288
Pathogenicity islands 192
Peripheral pathways for catabolism of aromatic compounds 176
Periplasmic Stress 8
Phages, Prophages 395
Phosphate metabolism 12
Phospholipids 166
Plant Alkaloids 0
Plant Hormones 49
Plant-Prokaryote DOE project 2662
Plasmid related functions 0
Polysaccharides 246
Probably GTP or GMP signaling related 110
Probably Pyrimidine biosynthesis-related 30
Probably Ybbk-related hypothetical membrane proteins 14
Probably organic hydroperoxide resistance related hypothetical protein 13
Programmed Cell Death and Toxin-antitoxin Systems 26
Proline and 4-hydroxyproline 134
Proteasome related clusters 0
Protein and nucleoprotein secretion system, Type IV 85
Protein biosynthesis 3501
Protein degradation 436
Protein export? 181
Protein folding 417
Protein processing and modification 378
Protein secretion system, Type I 0
Protein secretion system, Type II 21
Protein secretion system, Type III 11
Protein secretion system, Type V 0
Protein secretion system, Type VI 107
Protein secretion system, Type VII (Chaperone/Usher pathway, CU) 0
Protein secretion system, Type VIII (Extracellular nucleation/precipitation pathway, ENP) 0
Protein translocation across cytoplasmic membrane 255
Proteolytic pathway 0
Purines 710
Putative GGDEF domain protein related to agglutinin secretion 0
Putative Isoquinoline 1-oxidoreductase subunit 0
Putative asociate of RNA polymerase sigma-54 factor rpoN 0
Putrescine/GABA utilization cluster-temporal,to add to SSs 10
Pyridoxine 183
Pyrimidines 518
Pyruvate kinase associated cluster 0
Quinone cofactors 25
Quorum sensing and biofilm formation 97
RNA processing and modification 1196
Recombination related cluster 30
Regulation of virulence 150
Related to Menaquinone-cytochrome C reductase 0
Resistance to antibiotics and toxic compounds 538
Reverse electron transport 2
Riboflavin, FMN, FAD 22
Ribosomal Protein L28P relates to a set of uncharacterized proteins 26
Ribosome-related cluster 98
Sarcosine oxidase 8
Selenoproteins 71
Shiga toxin cluster 20
Siderophores 2
Sodium Ion-Coupled Energetics 75
Spore DNA protection 0
Sugar Phosphotransferase Systems, PTS 27
Sugar alcohols 203
Sulfatases and sulfatase modifying factor 1 (and a hypothetical) 8
Tetrapyrroles 181
Three hypotheticals linked to lipoprotein biosynthesis 10
TldD cluster 20
Toxins and superantigens 0
Transcription 577
Translation 152
Transposable elements 40
Triacylglycerols 0
Tricarboxylate transporter 24
Two related proteases 114
Uni- Sym- and Antiporters 19
alpha-proteobacterial cluster of hypotheticals 0
proteosome related 9
recX and regulatory cluster 17
tRNA sulfuration 14
Archaea 0
Bacteria 0
Eukaryota 0
mgm4441680.3
ABC transporters 175
ATP synthases 145
Acid stress 21
Adhesion 8
Alanine, serine, and glycine 241
Aminosugars 116
Anaerobic degradation of aromatic compounds 48
Arginine; urea cycle, polyamines 288
Aromatic amino acids and derivatives 284
Bacterial cytostatics, differentiation factors and antibiotics 0
Bacteriocins, ribosomally synthesized antibacterial peptides 2
Biologically active compounds in metazoan cell defence and differentiation 6
Biosynthesis of galactoglycans and related lipopolysacharides 69
Biosynthesis of phenylpropanoids 0
Biotin 102
Branched-chain amino acids 228
CO2 fixation 314
CRISPRs and associated hypotheticals 2
CRISPs 6
Capsular and extracellular polysacchrides 595
Carbohydrates 36
Carotenoid biosynthesis 0
Cell Division 127
Cell wall of Mycobacteria 47
Central carbohydrate metabolism 1114
Chemotaxis, response regulators 0
Choline bitartrate degradation, putative 8
Chromosome Replication 20
Clustering-based subsystems 136
Coenzyme A 29
Coenzyme B 0
Coenzyme F420 0
Coenzyme M 0
Cold shock 0
Cytochrome biogenesis 71
D-tyrosyl-tRNA(Tyr) deacylase (EC 3.1.-.-) cluster 0
DNA metabolism 1
DNA polymerase III epsilon cluster 26
DNA recombination 50
DNA repair 648
DNA replication 734
DNA uptake, competence 42
Detection 101
Detoxification 29
Di- and oligosaccharides 645
Electron accepting reactions 49
Electron donating reactions 245
Electron transport and photophosphorylation 1
Fatty acid metabolic cluster 119
Fatty acids 202
Fermentation 209
Flagella protein? 0
Flagellar motility in Prokaryota 60
Folate and pterines 695
Gene Transfer Agent (GTA) 0
Glutamine, glutamate, aspartate, asparagine; ammonia assimilation 378
Glycoside hydrolases 21
Gram-Negative cell wall components 171
Gram-Positive cell wall components 50
Heat shock 194
Histidine Metabolism 124
Hypothetical Related to Dihydroorate Dehydrogenase 2
Hypothetical associated with RecF 0
Hypothetical in Lysine biosynthetic cluster 25
Hypothetical lipase related to Phosphatidate metabolism 12
Hypothetical protein possible functionally linked with Alanyl-tRNA synthetase 52
Inorganic sulfur assimilation 42
Invasion and intracellular resistance 10
Isoprenoid/cell wall biosynthesis: PREDICTED UNDECAPRENYL DIPHOSPHATE PHOSPHATASE 63
Isoprenoids 127
Lipid-derived mediators 3
Lipoic acid 3
Lysine Biosynthesis 2
Lysine, threonine, methionine, and cysteine 811
Metabolism of central aromatic intermediates 26
Methylamine utilization 89
Molybdopterin oxidoreductase 0
Monosaccharides 828
NAD and NADP 141
Nucleotidyl-phosphate metabolic cluster 55
One-carbon Metabolism 514
Organic acids 126
Organic sulfur assimilation 18
Osmotic stress 17
Oxidative stress 176
Pathogenicity islands 133
Peripheral pathways for catabolism of aromatic compounds 126
Periplasmic Stress 16
Phages, Prophages 245
Phosphate metabolism 7
Phospholipids 176
Plant Alkaloids 0
Plant Hormones 26
Plant-Prokaryote DOE project 1792
Plasmid related functions 0
Polysaccharides 258
Probably GTP or GMP signaling related 55
Probably Pyrimidine biosynthesis-related 17
Probably Ybbk-related hypothetical membrane proteins 1
Probably organic hydroperoxide resistance related hypothetical protein 9
Programmed Cell Death and Toxin-antitoxin Systems 10
Proline and 4-hydroxyproline 68
Proteasome related clusters 1
Protein and nucleoprotein secretion system, Type IV 55
Protein biosynthesis 2463
Protein degradation 351
Protein export? 145
Protein folding 321
Protein processing and modification 261
Protein secretion system, Type I 0
Protein secretion system, Type II 20
Protein secretion system, Type III 9
Protein secretion system, Type V 3
Protein secretion system, Type VI 91
Protein secretion system, Type VII (Chaperone/Usher pathway, CU) 0
Protein secretion system, Type VIII (Extracellular nucleation/precipitation pathway, ENP) 0
Protein translocation across cytoplasmic membrane 196
Proteolytic pathway 1
Purines 483
Putative GGDEF domain protein related to agglutinin secretion 0
Putative Isoquinoline 1-oxidoreductase subunit 0
Putative asociate of RNA polymerase sigma-54 factor rpoN 1
Putrescine/GABA utilization cluster-temporal,to add to SSs 5
Pyridoxine 90
Pyrimidines 380
Pyruvate kinase associated cluster 0
Quinone cofactors 9
Quorum sensing and biofilm formation 59
RNA processing and modification 657
Recombination related cluster 30
Regulation of virulence 63
Related to Menaquinone-cytochrome C reductase 0
Resistance to antibiotics and toxic compounds 432
Reverse electron transport 5
Riboflavin, FMN, FAD 40
Ribosomal Protein L28P relates to a set of uncharacterized proteins 48
Ribosome-related cluster 77
Sarcosine oxidase 4
Selenoproteins 28
Shiga toxin cluster 18
Siderophores 0
Sodium Ion-Coupled Energetics 62
Spore DNA protection 0
Sugar Phosphotransferase Systems, PTS 9
Sugar alcohols 120
Sulfatases and sulfatase modifying factor 1 (and a hypothetical) 7
Tetrapyrroles 133
Three hypotheticals linked to lipoprotein biosynthesis 0
TldD cluster 21
Toxins and superantigens 0
Transcription 467
Translation 78
Transposable elements 61
Triacylglycerols 4
Tricarboxylate transporter 19
Two related proteases 83
Uni- Sym- and Antiporters 11
alpha-proteobacterial cluster of hypotheticals 0
proteosome related 0
recX and regulatory cluster 11
tRNA sulfuration 14
Archaea 0
Bacteria 0
Eukaryota 0
mgm4441682.3
ABC transporters 222
ATP synthases 210
Acid stress 9
Adhesion 19
Alanine, serine, and glycine 346
Aminosugars 122
Anaerobic degradation of aromatic compounds 24
Arginine; urea cycle, polyamines 428
Aromatic amino acids and derivatives 451
Bacterial cytostatics, differentiation factors and antibiotics 0
Bacteriocins, ribosomally synthesized antibacterial peptides 1
Biologically active compounds in metazoan cell defence and differentiation 0
Biosynthesis of galactoglycans and related lipopolysacharides 118
Biosynthesis of phenylpropanoids 0
Biotin 101
Branched-chain amino acids 333
CO2 fixation 379
CRISPRs and associated hypotheticals 4
CRISPs 8
Capsular and extracellular polysacchrides 738
Carbohydrates 45
Carotenoid biosynthesis 0
Cell Division 212
Cell wall of Mycobacteria 58
Central carbohydrate metabolism 1351
Chemotaxis, response regulators 0
Choline bitartrate degradation, putative 13
Chromosome Replication 18
Clustering-based subsystems 180
Coenzyme A 10
Coenzyme B 6
Coenzyme F420 9
Coenzyme M 2
Cold shock 3
Cytochrome biogenesis 73
D-tyrosyl-tRNA(Tyr) deacylase (EC 3.1.-.-) cluster 0
DNA metabolism 0
DNA polymerase III epsilon cluster 13
DNA recombination 78
DNA repair 802
DNA replication 1120
DNA uptake, competence 94
Detection 127
Detoxification 17
Di- and oligosaccharides 835
Electron accepting reactions 62
Electron donating reactions 356
Electron transport and photophosphorylation 0
Fatty acid metabolic cluster 175
Fatty acids 232
Fermentation 297
Flagella protein? 0
Flagellar motility in Prokaryota 84
Folate and pterines 902
Gene Transfer Agent (GTA) 2
Glutamine, glutamate, aspartate, asparagine; ammonia assimilation 460
Glycoside hydrolases 21
Gram-Negative cell wall components 219
Gram-Positive cell wall components 77
Heat shock 299
Histidine Metabolism 183
Hypothetical Related to Dihydroorate Dehydrogenase 0
Hypothetical associated with RecF 0
Hypothetical in Lysine biosynthetic cluster 38
Hypothetical lipase related to Phosphatidate metabolism 15
Hypothetical protein possible functionally linked with Alanyl-tRNA synthetase 73
Inorganic sulfur assimilation 49
Invasion and intracellular resistance 6
Isoprenoid/cell wall biosynthesis: PREDICTED UNDECAPRENYL DIPHOSPHATE PHOSPHATASE 96
Isoprenoids 170
Lipid-derived mediators 0
Lipoic acid 0
Lysine Biosynthesis 3
Lysine, threonine, methionine, and cysteine 1041
Metabolism of central aromatic intermediates 22
Methylamine utilization 118
Molybdopterin oxidoreductase 0
Monosaccharides 980
NAD and NADP 59
Nucleotidyl-phosphate metabolic cluster 72
One-carbon Metabolism 619
Organic acids 163
Organic sulfur assimilation 17
Osmotic stress 33
Oxidative stress 177
Pathogenicity islands 166
Peripheral pathways for catabolism of aromatic compounds 136
Periplasmic Stress 23
Phages, Prophages 463
Phosphate metabolism 17
Phospholipids 147
Plant Alkaloids 2
Plant Hormones 63
Plant-Prokaryote DOE project 2269
Plasmid related functions 0
Polysaccharides 295
Probably GTP or GMP signaling related 104
Probably Pyrimidine biosynthesis-related 29
Probably Ybbk-related hypothetical membrane proteins 18
Probably organic hydroperoxide resistance related hypothetical protein 6
Programmed Cell Death and Toxin-antitoxin Systems 9
Proline and 4-hydroxyproline 122
Proteasome related clusters 3
Protein and nucleoprotein secretion system, Type IV 78
Protein biosynthesis 3175
Protein degradation 427
Protein export? 168
Protein folding 391
Protein processing and modification 294
Protein secretion system, Type I 0
Protein secretion system, Type II 30
Protein secretion system, Type III 1
Protein secretion system, Type V 3
Protein secretion system, Type VI 107
Protein secretion system, Type VII (Chaperone/Usher pathway, CU) 0
Protein secretion system, Type VIII (Extracellular nucleation/precipitation pathway, ENP) 2
Protein translocation across cytoplasmic membrane 249
Proteolytic pathway 0
Purines 719
Putative GGDEF domain protein related to agglutinin secretion 0
Putative Isoquinoline 1-oxidoreductase subunit 0
Putative asociate of RNA polymerase sigma-54 factor rpoN 0
Putrescine/GABA utilization cluster-temporal,to add to SSs 2
Pyridoxine 124
Pyrimidines 565
Pyruvate kinase associated cluster 0
Quinone cofactors 20
Quorum sensing and biofilm formation 75
RNA processing and modification 859
Recombination related cluster 41
Regulation of virulence 81
Related to Menaquinone-cytochrome C reductase 0
Resistance to antibiotics and toxic compounds 468
Reverse electron transport 24
Riboflavin, FMN, FAD 14
Ribosomal Protein L28P relates to a set of uncharacterized proteins 47
Ribosome-related cluster 79
Sarcosine oxidase 16
Selenoproteins 65
Shiga toxin cluster 26
Siderophores 4
Sodium Ion-Coupled Energetics 64
Spore DNA protection 0
Sugar Phosphotransferase Systems, PTS 25
Sugar alcohols 233
Sulfatases and sulfatase modifying factor 1 (and a hypothetical) 3
Tetrapyrroles 248
Three hypotheticals linked to lipoprotein biosynthesis 11
TldD cluster 1
Toxins and superantigens 0
Transcription 649
Translation 137
Transposable elements 25
Triacylglycerols 0
Tricarboxylate transporter 26
Two related proteases 99
Uni- Sym- and Antiporters 18
alpha-proteobacterial cluster of hypotheticals 0
proteosome related 5
recX and regulatory cluster 10
tRNA sulfuration 18
Archaea 0
Bacteria 0
Eukaryota 0
mgm4441695.3
ABC transporters 208
ATP synthases 22
Acid stress 9
Adhesion 17
Alanine, serine, and glycine 119
Aminosugars 9
Anaerobic degradation of aromatic compounds 33
Arginine; urea cycle, polyamines 289
Aromatic amino acids and derivatives 106
Bacterial cytostatics, differentiation factors and antibiotics 4
Bacteriocins, ribosomally synthesized antibacterial peptides 2
Biologically active compounds in metazoan cell defence and differentiation 9
Biosynthesis of galactoglycans and related lipopolysacharides 37
Biosynthesis of phenylpropanoids 5
Biotin 65
Branched-chain amino acids 309
CO2 fixation 158
CRISPRs and associated hypotheticals 0
CRISPs 0
Capsular and extracellular polysacchrides 177
Carbohydrates 31
Carotenoid biosynthesis 0
Cell Division 59
Cell wall of Mycobacteria 45
Central carbohydrate metabolism 771
Chemotaxis, response regulators 2
Choline bitartrate degradation, putative 12
Chromosome Replication 3
Clustering-based subsystems 120
Coenzyme A 19
Coenzyme B 0
Coenzyme F420 0
Coenzyme M 1
Cold shock 4
Cytochrome biogenesis 29
D-tyrosyl-tRNA(Tyr) deacylase (EC 3.1.-.-) cluster 1
DNA metabolism 0
DNA polymerase III epsilon cluster 19
DNA recombination 22
DNA repair 273
DNA replication 202
DNA uptake, competence 19
Detection 42
Detoxification 54
Di- and oligosaccharides 198
Electron accepting reactions 196
Electron donating reactions 188
Electron transport and photophosphorylation 0
Fatty acid metabolic cluster 139
Fatty acids 199
Fermentation 182
Flagella protein? 5
Flagellar motility in Prokaryota 215
Folate and pterines 479
Gene Transfer Agent (GTA) 0
Glutamine, glutamate, aspartate, asparagine; ammonia assimilation 136
Glycoside hydrolases 3
Gram-Negative cell wall components 245
Gram-Positive cell wall components 9
Heat shock 70
Histidine Metabolism 68
Hypothetical Related to Dihydroorate Dehydrogenase 2
Hypothetical associated with RecF 2
Hypothetical in Lysine biosynthetic cluster 21
Hypothetical lipase related to Phosphatidate metabolism 13
Hypothetical protein possible functionally linked with Alanyl-tRNA synthetase 15
Inorganic sulfur assimilation 29
Invasion and intracellular resistance 0
Isoprenoid/cell wall biosynthesis: PREDICTED UNDECAPRENYL DIPHOSPHATE PHOSPHATASE 28
Isoprenoids 52
Lipid-derived mediators 3
Lipoic acid 10
Lysine Biosynthesis 6
Lysine, threonine, methionine, and cysteine 491
Metabolism of central aromatic intermediates 126
Methylamine utilization 39
Molybdopterin oxidoreductase 0
Monosaccharides 483
NAD and NADP 65
Nucleotidyl-phosphate metabolic cluster 57
One-carbon Metabolism 414
Organic acids 245
Organic sulfur assimilation 142
Osmotic stress 53
Oxidative stress 239
Pathogenicity islands 28
Peripheral pathways for catabolism of aromatic compounds 150
Periplasmic Stress 21
Phages, Prophages 188
Phosphate metabolism 24
Phospholipids 122
Plant Alkaloids 0
Plant Hormones 17
Plant-Prokaryote DOE project 1194
Plasmid related functions 5
Polysaccharides 34
Probably GTP or GMP signaling related 39
Probably Pyrimidine biosynthesis-related 10
Probably Ybbk-related hypothetical membrane proteins 1
Probably organic hydroperoxide resistance related hypothetical protein 4
Programmed Cell Death and Toxin-antitoxin Systems 6
Proline and 4-hydroxyproline 55
Proteasome related clusters 0
Protein and nucleoprotein secretion system, Type IV 131
Protein biosynthesis 517
Protein degradation 172
Protein export? 25
Protein folding 111
Protein processing and modification 145
Protein secretion system, Type I 1
Protein secretion system, Type II 30
Protein secretion system, Type III 0
Protein secretion system, Type V 2
Protein secretion system, Type VI 118
Protein secretion system, Type VII (Chaperone/Usher pathway, CU) 14
Protein secretion system, Type VIII (Extracellular nucleation/precipitation pathway, ENP) 0
Protein translocation across cytoplasmic membrane 45
Proteolytic pathway 0
Purines 311
Putative GGDEF domain protein related to agglutinin secretion 0
Putative Isoquinoline 1-oxidoreductase subunit 37
Putative asociate of RNA polymerase sigma-54 factor rpoN 36
Putrescine/GABA utilization cluster-temporal,to add to SSs 42
Pyridoxine 39
Pyrimidines 146
Pyruvate kinase associated cluster 25
Quinone cofactors 90
Quorum sensing and biofilm formation 3
RNA processing and modification 444
Recombination related cluster 1
Regulation of virulence 45
Related to Menaquinone-cytochrome C reductase 1
Resistance to antibiotics and toxic compounds 696
Reverse electron transport 0
Riboflavin, FMN, FAD 58
Ribosomal Protein L28P relates to a set of uncharacterized proteins 23
Ribosome-related cluster 19
Sarcosine oxidase 7
Selenoproteins 64
Shiga toxin cluster 8
Siderophores 13
Sodium Ion-Coupled Energetics 0
Spore DNA protection 0
Sugar Phosphotransferase Systems, PTS 18
Sugar alcohols 140
Sulfatases and sulfatase modifying factor 1 (and a hypothetical) 9
Tetrapyrroles 84
Three hypotheticals linked to lipoprotein biosynthesis 9
TldD cluster 20
Toxins and superantigens 0
Transcription 193
Translation 40
Transposable elements 34
Triacylglycerols 11
Tricarboxylate transporter 11
Two related proteases 14
Uni- Sym- and Antiporters 3
alpha-proteobacterial cluster of hypotheticals 0
proteosome related 4
recX and regulatory cluster 0
tRNA sulfuration 6
Archaea 0
Bacteria 0
Eukaryota 0
mgm4441696.3
ABC transporters 285
ATP synthases 15
Acid stress 8
Adhesion 7
Alanine, serine, and glycine 136
Aminosugars 31
Anaerobic degradation of aromatic compounds 50
Arginine; urea cycle, polyamines 256
Aromatic amino acids and derivatives 125
Bacterial cytostatics, differentiation factors and antibiotics 2
Bacteriocins, ribosomally synthesized antibacterial peptides 11
Biologically active compounds in metazoan cell defence and differentiation 7
Biosynthesis of galactoglycans and related lipopolysacharides 58
Biosynthesis of phenylpropanoids 1
Biotin 101
Branched-chain amino acids 219
CO2 fixation 227
CRISPRs and associated hypotheticals 1
CRISPs 0
Capsular and extracellular polysacchrides 195
Carbohydrates 10
Carotenoid biosynthesis 3
Cell Division 20
Cell wall of Mycobacteria 44
Central carbohydrate metabolism 628
Chemotaxis, response regulators 0
Choline bitartrate degradation, putative 16
Chromosome Replication 9
Clustering-based subsystems 120
Coenzyme A 32
Coenzyme B 0
Coenzyme F420 0
Coenzyme M 2
Cold shock 2
Cytochrome biogenesis 46
D-tyrosyl-tRNA(Tyr) deacylase (EC 3.1.-.-) cluster 16
DNA metabolism 0
DNA polymerase III epsilon cluster 15
DNA recombination 19
DNA repair 270
DNA replication 296
DNA uptake, competence 24
Detection 36
Detoxification 79
Di- and oligosaccharides 322
Electron accepting reactions 162
Electron donating reactions 203
Electron transport and photophosphorylation 0
Fatty acid metabolic cluster 71
Fatty acids 164
Fermentation 142
Flagella protein? 6
Flagellar motility in Prokaryota 209
Folate and pterines 456
Gene Transfer Agent (GTA) 0
Glutamine, glutamate, aspartate, asparagine; ammonia assimilation 149
Glycoside hydrolases 15
Gram-Negative cell wall components 268
Gram-Positive cell wall components 8
Heat shock 47
Histidine Metabolism 84
Hypothetical Related to Dihydroorate Dehydrogenase 10
Hypothetical associated with RecF 0
Hypothetical in Lysine biosynthetic cluster 12
Hypothetical lipase related to Phosphatidate metabolism 10
Hypothetical protein possible functionally linked with Alanyl-tRNA synthetase 10
Inorganic sulfur assimilation 97
Invasion and intracellular resistance 0
Isoprenoid/cell wall biosynthesis: PREDICTED UNDECAPRENYL DIPHOSPHATE PHOSPHATASE 40
Isoprenoids 62
Lipid-derived mediators 0
Lipoic acid 19
Lysine Biosynthesis 0
Lysine, threonine, methionine, and cysteine 455
Metabolism of central aromatic intermediates 147
Methylamine utilization 23
Molybdopterin oxidoreductase 0
Monosaccharides 497
NAD and NADP 91
Nucleotidyl-phosphate metabolic cluster 13
One-carbon Metabolism 316
Organic acids 234
Organic sulfur assimilation 221
Osmotic stress 103
Oxidative stress 245
Pathogenicity islands 52
Peripheral pathways for catabolism of aromatic compounds 182
Periplasmic Stress 14
Phages, Prophages 260
Phosphate metabolism 23
Phospholipids 104
Plant Alkaloids 0
Plant Hormones 12
Plant-Prokaryote DOE project 1246
Plasmid related functions 5
Polysaccharides 96
Probably GTP or GMP signaling related 24
Probably Pyrimidine biosynthesis-related 2
Probably Ybbk-related hypothetical membrane proteins 4
Probably organic hydroperoxide resistance related hypothetical protein 16
Programmed Cell Death and Toxin-antitoxin Systems 11
Proline and 4-hydroxyproline 44
Proteasome related clusters 0
Protein and nucleoprotein secretion system, Type IV 100
Protein biosynthesis 606
Protein degradation 187
Protein export? 28
Protein folding 83
Protein processing and modification 108
Protein secretion system, Type I 7
Protein secretion system, Type II 18
Protein secretion system, Type III 3
Protein secretion system, Type V 4
Protein secretion system, Type VI 159
Protein secretion system, Type VII (Chaperone/Usher pathway, CU) 7
Protein secretion system, Type VIII (Extracellular nucleation/precipitation pathway, ENP) 1
Protein translocation across cytoplasmic membrane 63
Proteolytic pathway 0
Purines 379
Putative GGDEF domain protein related to agglutinin secretion 0
Putative Isoquinoline 1-oxidoreductase subunit 5
Putative asociate of RNA polymerase sigma-54 factor rpoN 32
Putrescine/GABA utilization cluster-temporal,to add to SSs 49
Pyridoxine 67
Pyrimidines 144
Pyruvate kinase associated cluster 13
Quinone cofactors 72
Quorum sensing and biofilm formation 14
RNA processing and modification 446
Recombination related cluster 2
Regulation of virulence 29
Related to Menaquinone-cytochrome C reductase 0
Resistance to antibiotics and toxic compounds 648
Reverse electron transport 0
Riboflavin, FMN, FAD 50
Ribosomal Protein L28P relates to a set of uncharacterized proteins 22
Ribosome-related cluster 20
Sarcosine oxidase 6
Selenoproteins 89
Shiga toxin cluster 8
Siderophores 23
Sodium Ion-Coupled Energetics 0
Spore DNA protection 0
Sugar Phosphotransferase Systems, PTS 2
Sugar alcohols 96
Sulfatases and sulfatase modifying factor 1 (and a hypothetical) 5
Tetrapyrroles 135
Three hypotheticals linked to lipoprotein biosynthesis 15
TldD cluster 31
Toxins and superantigens 0
Transcription 163
Translation 56
Transposable elements 42
Triacylglycerols 13
Tricarboxylate transporter 27
Two related proteases 11
Uni- Sym- and Antiporters 19
alpha-proteobacterial cluster of hypotheticals 0
proteosome related 5
recX and regulatory cluster 7
tRNA sulfuration 4
Archaea 0
Bacteria 0
Eukaryota 0
mgm4575333.3
ABC transporters 0
ATP synthases 0
Acid stress 0
Adhesion 0
Alanine, serine, and glycine 0
Aminosugars 0
Anaerobic degradation of aromatic compounds 0
Arginine; urea cycle, polyamines 0
Aromatic amino acids and derivatives 0
Bacterial cytostatics, differentiation factors and antibiotics 0
Bacteriocins, ribosomally synthesized antibacterial peptides 0
Biologically active compounds in metazoan cell defence and differentiation 0
Biosynthesis of galactoglycans and related lipopolysacharides 0
Biosynthesis of phenylpropanoids 0
Biotin 0
Branched-chain amino acids 0
CO2 fixation 0
CRISPRs and associated hypotheticals 0
CRISPs 0
Capsular and extracellular polysacchrides 0
Carbohydrates 0
Carotenoid biosynthesis 0
Cell Division 0
Cell wall of Mycobacteria 0
Central carbohydrate metabolism 0
Chemotaxis, response regulators 0
Choline bitartrate degradation, putative 0
Chromosome Replication 0
Clustering-based subsystems 0
Coenzyme A 0
Coenzyme B 0
Coenzyme F420 0
Coenzyme M 0
Cold shock 0
Cytochrome biogenesis 0
D-tyrosyl-tRNA(Tyr) deacylase (EC 3.1.-.-) cluster 0
DNA metabolism 0
DNA polymerase III epsilon cluster 0
DNA recombination 0
DNA repair 0
DNA replication 0
DNA uptake, competence 0
Detection 0
Detoxification 0
Di- and oligosaccharides 0
Electron accepting reactions 0
Electron donating reactions 0
Electron transport and photophosphorylation 0
Fatty acid metabolic cluster 0
Fatty acids 0
Fermentation 0
Flagella protein? 0
Flagellar motility in Prokaryota 0
Folate and pterines 0
Gene Transfer Agent (GTA) 0
Glutamine, glutamate, aspartate, asparagine; ammonia assimilation 0
Glycoside hydrolases 0
Gram-Negative cell wall components 0
Gram-Positive cell wall components 0
Heat shock 0
Histidine Metabolism 0
Hypothetical Related to Dihydroorate Dehydrogenase 0
Hypothetical associated with RecF 0
Hypothetical in Lysine biosynthetic cluster 0
Hypothetical lipase related to Phosphatidate metabolism 0
Hypothetical protein possible functionally linked with Alanyl-tRNA synthetase 0
Inorganic sulfur assimilation 0
Invasion and intracellular resistance 0
Isoprenoid/cell wall biosynthesis: PREDICTED UNDECAPRENYL DIPHOSPHATE PHOSPHATASE 0
Isoprenoids 0
Lipid-derived mediators 0
Lipoic acid 0
Lysine Biosynthesis 0
Lysine, threonine, methionine, and cysteine 0
Metabolism of central aromatic intermediates 0
Methylamine utilization 0
Molybdopterin oxidoreductase 0
Monosaccharides 0
NAD and NADP 0
Nucleotidyl-phosphate metabolic cluster 0
One-carbon Metabolism 0
Organic acids 0
Organic sulfur assimilation 0
Osmotic stress 0
Oxidative stress 0
Pathogenicity islands 0
Peripheral pathways for catabolism of aromatic compounds 0
Periplasmic Stress 0
Phages, Prophages 0
Phosphate metabolism 0
Phospholipids 0
Plant Alkaloids 0
Plant Hormones 0
Plant-Prokaryote DOE project 0
Plasmid related functions 0
Polysaccharides 0
Probably GTP or GMP signaling related 0
Probably Pyrimidine biosynthesis-related 0
Probably Ybbk-related hypothetical membrane proteins 0
Probably organic hydroperoxide resistance related hypothetical protein 0
Programmed Cell Death and Toxin-antitoxin Systems 0
Proline and 4-hydroxyproline 0
Proteasome related clusters 0
Protein and nucleoprotein secretion system, Type IV 0
Protein biosynthesis 0
Protein degradation 0
Protein export? 0
Protein folding 0
Protein processing and modification 0
Protein secretion system, Type I 0
Protein secretion system, Type II 0
Protein secretion system, Type III 0
Protein secretion system, Type V 0
Protein secretion system, Type VI 0
Protein secretion system, Type VII (Chaperone/Usher pathway, CU) 0
Protein secretion system, Type VIII (Extracellular nucleation/precipitation pathway, ENP) 0
Protein translocation across cytoplasmic membrane 0
Proteolytic pathway 0
Purines 0
Putative GGDEF domain protein related to agglutinin secretion 0
Putative Isoquinoline 1-oxidoreductase subunit 0
Putative asociate of RNA polymerase sigma-54 factor rpoN 0
Putrescine/GABA utilization cluster-temporal,to add to SSs 0
Pyridoxine 0
Pyrimidines 0
Pyruvate kinase associated cluster 0
Quinone cofactors 0
Quorum sensing and biofilm formation 0
RNA processing and modification 0
Recombination related cluster 0
Regulation of virulence 0
Related to Menaquinone-cytochrome C reductase 0
Resistance to antibiotics and toxic compounds 0
Reverse electron transport 0
Riboflavin, FMN, FAD 0
Ribosomal Protein L28P relates to a set of uncharacterized proteins 0
Ribosome-related cluster 0
Sarcosine oxidase 0
Selenoproteins 0
Shiga toxin cluster 0
Siderophores 0
Sodium Ion-Coupled Energetics 0
Spore DNA protection 0
Sugar Phosphotransferase Systems, PTS 0
Sugar alcohols 0
Sulfatases and sulfatase modifying factor 1 (and a hypothetical) 0
Tetrapyrroles 0
Three hypotheticals linked to lipoprotein biosynthesis 0
TldD cluster 0
Toxins and superantigens 0
Transcription 0
Translation 0
Transposable elements 0
Triacylglycerols 0
Tricarboxylate transporter 0
Two related proteases 0
Uni- Sym- and Antiporters 0
alpha-proteobacterial cluster of hypotheticals 0
proteosome related 0
recX and regulatory cluster 0
tRNA sulfuration 0
Archaea 15893
Bacteria 168162
Eukaryota 59
mgm4575334.3
ABC transporters 0
ATP synthases 0
Acid stress 0
Adhesion 0
Alanine, serine, and glycine 0
Aminosugars 0
Anaerobic degradation of aromatic compounds 0
Arginine; urea cycle, polyamines 0
Aromatic amino acids and derivatives 0
Bacterial cytostatics, differentiation factors and antibiotics 0
Bacteriocins, ribosomally synthesized antibacterial peptides 0
Biologically active compounds in metazoan cell defence and differentiation 0
Biosynthesis of galactoglycans and related lipopolysacharides 0
Biosynthesis of phenylpropanoids 0
Biotin 0
Branched-chain amino acids 0
CO2 fixation 0
CRISPRs and associated hypotheticals 0
CRISPs 0
Capsular and extracellular polysacchrides 0
Carbohydrates 0
Carotenoid biosynthesis 0
Cell Division 0
Cell wall of Mycobacteria 0
Central carbohydrate metabolism 0
Chemotaxis, response regulators 0
Choline bitartrate degradation, putative 0
Chromosome Replication 0
Clustering-based subsystems 0
Coenzyme A 0
Coenzyme B 0
Coenzyme F420 0
Coenzyme M 0
Cold shock 0
Cytochrome biogenesis 0
D-tyrosyl-tRNA(Tyr) deacylase (EC 3.1.-.-) cluster 0
DNA metabolism 0
DNA polymerase III epsilon cluster 0
DNA recombination 0
DNA repair 0
DNA replication 0
DNA uptake, competence 0
Detection 0
Detoxification 0
Di- and oligosaccharides 0
Electron accepting reactions 0
Electron donating reactions 0
Electron transport and photophosphorylation 0
Fatty acid metabolic cluster 0
Fatty acids 0
Fermentation 0
Flagella protein? 0
Flagellar motility in Prokaryota 0
Folate and pterines 0
Gene Transfer Agent (GTA) 0
Glutamine, glutamate, aspartate, asparagine; ammonia assimilation 0
Glycoside hydrolases 0
Gram-Negative cell wall components 0
Gram-Positive cell wall components 0
Heat shock 0
Histidine Metabolism 0
Hypothetical Related to Dihydroorate Dehydrogenase 0
Hypothetical associated with RecF 0
Hypothetical in Lysine biosynthetic cluster 0
Hypothetical lipase related to Phosphatidate metabolism 0
Hypothetical protein possible functionally linked with Alanyl-tRNA synthetase 0
Inorganic sulfur assimilation 0
Invasion and intracellular resistance 0
Isoprenoid/cell wall biosynthesis: PREDICTED UNDECAPRENYL DIPHOSPHATE PHOSPHATASE 0
Isoprenoids 0
Lipid-derived mediators 0
Lipoic acid 0
Lysine Biosynthesis 0
Lysine, threonine, methionine, and cysteine 0
Metabolism of central aromatic intermediates 0
Methylamine utilization 0
Molybdopterin oxidoreductase 0
Monosaccharides 0
NAD and NADP 0
Nucleotidyl-phosphate metabolic cluster 0
One-carbon Metabolism 0
Organic acids 0
Organic sulfur assimilation 0
Osmotic stress 0
Oxidative stress 0
Pathogenicity islands 0
Peripheral pathways for catabolism of aromatic compounds 0
Periplasmic Stress 0
Phages, Prophages 0
Phosphate metabolism 0
Phospholipids 0
Plant Alkaloids 0
Plant Hormones 0
Plant-Prokaryote DOE project 0
Plasmid related functions 0
Polysaccharides 0
Probably GTP or GMP signaling related 0
Probably Pyrimidine biosynthesis-related 0
Probably Ybbk-related hypothetical membrane proteins 0
Probably organic hydroperoxide resistance related hypothetical protein 0
Programmed Cell Death and Toxin-antitoxin Systems 0
Proline and 4-hydroxyproline 0
Proteasome related clusters 0
Protein and nucleoprotein secretion system, Type IV 0
Protein biosynthesis 0
Protein degradation 0
Protein export? 0
Protein folding 0
Protein processing and modification 0
Protein secretion system, Type I 0
Protein secretion system, Type II 0
Protein secretion system, Type III 0
Protein secretion system, Type V 0
Protein secretion system, Type VI 0
Protein secretion system, Type VII (Chaperone/Usher pathway, CU) 0
Protein secretion system, Type VIII (Extracellular nucleation/precipitation pathway, ENP) 0
Protein translocation across cytoplasmic membrane 0
Proteolytic pathway 0
Purines 0
Putative GGDEF domain protein related to agglutinin secretion 0
Putative Isoquinoline 1-oxidoreductase subunit 0
Putative asociate of RNA polymerase sigma-54 factor rpoN 0
Putrescine/GABA utilization cluster-temporal,to add to SSs 0
Pyridoxine 0
Pyrimidines 0
Pyruvate kinase associated cluster 0
Quinone cofactors 0
Quorum sensing and biofilm formation 0
RNA processing and modification 0
Recombination related cluster 0
Regulation of virulence 0
Related to Menaquinone-cytochrome C reductase 0
Resistance to antibiotics and toxic compounds 0
Reverse electron transport 0
Riboflavin, FMN, FAD 0
Ribosomal Protein L28P relates to a set of uncharacterized proteins 0
Ribosome-related cluster 0
Sarcosine oxidase 0
Selenoproteins 0
Shiga toxin cluster 0
Siderophores 0
Sodium Ion-Coupled Energetics 0
Spore DNA protection 0
Sugar Phosphotransferase Systems, PTS 0
Sugar alcohols 0
Sulfatases and sulfatase modifying factor 1 (and a hypothetical) 0
Tetrapyrroles 0
Three hypotheticals linked to lipoprotein biosynthesis 0
TldD cluster 0
Toxins and superantigens 0
Transcription 0
Translation 0
Transposable elements 0
Triacylglycerols 0
Tricarboxylate transporter 0
Two related proteases 0
Uni- Sym- and Antiporters 0
alpha-proteobacterial cluster of hypotheticals 0
proteosome related 0
recX and regulatory cluster 0
tRNA sulfuration 0
Archaea 0
Bacteria 164695
Eukaryota 83
mgm4575335.3
ABC transporters 0
ATP synthases 0
Acid stress 0
Adhesion 0
Alanine, serine, and glycine 0
Aminosugars 0
Anaerobic degradation of aromatic compounds 0
Arginine; urea cycle, polyamines 0
Aromatic amino acids and derivatives 0
Bacterial cytostatics, differentiation factors and antibiotics 0
Bacteriocins, ribosomally synthesized antibacterial peptides 0
Biologically active compounds in metazoan cell defence and differentiation 0
Biosynthesis of galactoglycans and related lipopolysacharides 0
Biosynthesis of phenylpropanoids 0
Biotin 0
Branched-chain amino acids 0
CO2 fixation 0
CRISPRs and associated hypotheticals 0
CRISPs 0
Capsular and extracellular polysacchrides 0
Carbohydrates 0
Carotenoid biosynthesis 0
Cell Division 0
Cell wall of Mycobacteria 0
Central carbohydrate metabolism 0
Chemotaxis, response regulators 0
Choline bitartrate degradation, putative 0
Chromosome Replication 0
Clustering-based subsystems 0
Coenzyme A 0
Coenzyme B 0
Coenzyme F420 0
Coenzyme M 0
Cold shock 0
Cytochrome biogenesis 0
D-tyrosyl-tRNA(Tyr) deacylase (EC 3.1.-.-) cluster 0
DNA metabolism 0
DNA polymerase III epsilon cluster 0
DNA recombination 0
DNA repair 0
DNA replication 0
DNA uptake, competence 0
Detection 0
Detoxification 0
Di- and oligosaccharides 0
Electron accepting reactions 0
Electron donating reactions 0
Electron transport and photophosphorylation 0
Fatty acid metabolic cluster 0
Fatty acids 0
Fermentation 0
Flagella protein? 0
Flagellar motility in Prokaryota 0
Folate and pterines 0
Gene Transfer Agent (GTA) 0
Glutamine, glutamate, aspartate, asparagine; ammonia assimilation 0
Glycoside hydrolases 0
Gram-Negative cell wall components 0
Gram-Positive cell wall components 0
Heat shock 0
Histidine Metabolism 0
Hypothetical Related to Dihydroorate Dehydrogenase 0
Hypothetical associated with RecF 0
Hypothetical in Lysine biosynthetic cluster 0
Hypothetical lipase related to Phosphatidate metabolism 0
Hypothetical protein possible functionally linked with Alanyl-tRNA synthetase 0
Inorganic sulfur assimilation 0
Invasion and intracellular resistance 0
Isoprenoid/cell wall biosynthesis: PREDICTED UNDECAPRENYL DIPHOSPHATE PHOSPHATASE 0
Isoprenoids 0
Lipid-derived mediators 0
Lipoic acid 0
Lysine Biosynthesis 0
Lysine, threonine, methionine, and cysteine 0
Metabolism of central aromatic intermediates 0
Methylamine utilization 0
Molybdopterin oxidoreductase 0
Monosaccharides 0
NAD and NADP 0
Nucleotidyl-phosphate metabolic cluster 0
One-carbon Metabolism 0
Organic acids 0
Organic sulfur assimilation 0
Osmotic stress 0
Oxidative stress 0
Pathogenicity islands 0
Peripheral pathways for catabolism of aromatic compounds 0
Periplasmic Stress 0
Phages, Prophages 0
Phosphate metabolism 0
Phospholipids 0
Plant Alkaloids 0
Plant Hormones 0
Plant-Prokaryote DOE project 0
Plasmid related functions 0
Polysaccharides 0
Probably GTP or GMP signaling related 0
Probably Pyrimidine biosynthesis-related 0
Probably Ybbk-related hypothetical membrane proteins 0
Probably organic hydroperoxide resistance related hypothetical protein 0
Programmed Cell Death and Toxin-antitoxin Systems 0
Proline and 4-hydroxyproline 0
Proteasome related clusters 0
Protein and nucleoprotein secretion system, Type IV 0
Protein biosynthesis 0
Protein degradation 0
Protein export? 0
Protein folding 0
Protein processing and modification 0
Protein secretion system, Type I 0
Protein secretion system, Type II 0
Protein secretion system, Type III 0
Protein secretion system, Type V 0
Protein secretion system, Type VI 0
Protein secretion system, Type VII (Chaperone/Usher pathway, CU) 0
Protein secretion system, Type VIII (Extracellular nucleation/precipitation pathway, ENP) 0
Protein translocation across cytoplasmic membrane 0
Proteolytic pathway 0
Purines 0
Putative GGDEF domain protein related to agglutinin secretion 0
Putative Isoquinoline 1-oxidoreductase subunit 0
Putative asociate of RNA polymerase sigma-54 factor rpoN 0
Putrescine/GABA utilization cluster-temporal,to add to SSs 0
Pyridoxine 0
Pyrimidines 0
Pyruvate kinase associated cluster 0
Quinone cofactors 0
Quorum sensing and biofilm formation 0
RNA processing and modification 0
Recombination related cluster 0
Regulation of virulence 0
Related to Menaquinone-cytochrome C reductase 0
Resistance to antibiotics and toxic compounds 0
Reverse electron transport 0
Riboflavin, FMN, FAD 0
Ribosomal Protein L28P relates to a set of uncharacterized proteins 0
Ribosome-related cluster 0
Sarcosine oxidase 0
Selenoproteins 0
Shiga toxin cluster 0
Siderophores 0
Sodium Ion-Coupled Energetics 0
Spore DNA protection 0
Sugar Phosphotransferase Systems, PTS 0
Sugar alcohols 0
Sulfatases and sulfatase modifying factor 1 (and a hypothetical) 0
Tetrapyrroles 0
Three hypotheticals linked to lipoprotein biosynthesis 0
TldD cluster 0
Toxins and superantigens 0
Transcription 0
Translation 0
Transposable elements 0
Triacylglycerols 0
Tricarboxylate transporter 0
Two related proteases 0
Uni- Sym- and Antiporters 0
alpha-proteobacterial cluster of hypotheticals 0
proteosome related 0
recX and regulatory cluster 0
tRNA sulfuration 0
Archaea 63
Bacteria 179684
Eukaryota 23
mgm4575336.3
ABC transporters 0
ATP synthases 0
Acid stress 0
Adhesion 0
Alanine, serine, and glycine 0
Aminosugars 0
Anaerobic degradation of aromatic compounds 0
Arginine; urea cycle, polyamines 0
Aromatic amino acids and derivatives 0
Bacterial cytostatics, differentiation factors and antibiotics 0
Bacteriocins, ribosomally synthesized antibacterial peptides 0
Biologically active compounds in metazoan cell defence and differentiation 0
Biosynthesis of galactoglycans and related lipopolysacharides 0
Biosynthesis of phenylpropanoids 0
Biotin 0
Branched-chain amino acids 0
CO2 fixation 0
CRISPRs and associated hypotheticals 0
CRISPs 0
Capsular and extracellular polysacchrides 0
Carbohydrates 0
Carotenoid biosynthesis 0
Cell Division 0
Cell wall of Mycobacteria 0
Central carbohydrate metabolism 0
Chemotaxis, response regulators 0
Choline bitartrate degradation, putative 0
Chromosome Replication 0
Clustering-based subsystems 0
Coenzyme A 0
Coenzyme B 0
Coenzyme F420 0
Coenzyme M 0
Cold shock 0
Cytochrome biogenesis 0
D-tyrosyl-tRNA(Tyr) deacylase (EC 3.1.-.-) cluster 0
DNA metabolism 0
DNA polymerase III epsilon cluster 0
DNA recombination 0
DNA repair 0
DNA replication 0
DNA uptake, competence 0
Detection 0
Detoxification 0
Di- and oligosaccharides 0
Electron accepting reactions 0
Electron donating reactions 0
Electron transport and photophosphorylation 0
Fatty acid metabolic cluster 0
Fatty acids 0
Fermentation 0
Flagella protein? 0
Flagellar motility in Prokaryota 0
Folate and pterines 0
Gene Transfer Agent (GTA) 0
Glutamine, glutamate, aspartate, asparagine; ammonia assimilation 0
Glycoside hydrolases 0
Gram-Negative cell wall components 0
Gram-Positive cell wall components 0
Heat shock 0
Histidine Metabolism 0
Hypothetical Related to Dihydroorate Dehydrogenase 0
Hypothetical associated with RecF 0
Hypothetical in Lysine biosynthetic cluster 0
Hypothetical lipase related to Phosphatidate metabolism 0
Hypothetical protein possible functionally linked with Alanyl-tRNA synthetase 0
Inorganic sulfur assimilation 0
Invasion and intracellular resistance 0
Isoprenoid/cell wall biosynthesis: PREDICTED UNDECAPRENYL DIPHOSPHATE PHOSPHATASE 0
Isoprenoids 0
Lipid-derived mediators 0
Lipoic acid 0
Lysine Biosynthesis 0
Lysine, threonine, methionine, and cysteine 0
Metabolism of central aromatic intermediates 0
Methylamine utilization 0
Molybdopterin oxidoreductase 0
Monosaccharides 0
NAD and NADP 0
Nucleotidyl-phosphate metabolic cluster 0
One-carbon Metabolism 0
Organic acids 0
Organic sulfur assimilation 0
Osmotic stress 0
Oxidative stress 0
Pathogenicity islands 0
Peripheral pathways for catabolism of aromatic compounds 0
Periplasmic Stress 0
Phages, Prophages 0
Phosphate metabolism 0
Phospholipids 0
Plant Alkaloids 0
Plant Hormones 0
Plant-Prokaryote DOE project 0
Plasmid related functions 0
Polysaccharides 0
Probably GTP or GMP signaling related 0
Probably Pyrimidine biosynthesis-related 0
Probably Ybbk-related hypothetical membrane proteins 0
Probably organic hydroperoxide resistance related hypothetical protein 0
Programmed Cell Death and Toxin-antitoxin Systems 0
Proline and 4-hydroxyproline 0
Proteasome related clusters 0
Protein and nucleoprotein secretion system, Type IV 0
Protein biosynthesis 0
Protein degradation 0
Protein export? 0
Protein folding 0
Protein processing and modification 0
Protein secretion system, Type I 0
Protein secretion system, Type II 0
Protein secretion system, Type III 0
Protein secretion system, Type V 0
Protein secretion system, Type VI 0
Protein secretion system, Type VII (Chaperone/Usher pathway, CU) 0
Protein secretion system, Type VIII (Extracellular nucleation/precipitation pathway, ENP) 0
Protein translocation across cytoplasmic membrane 0
Proteolytic pathway 0
Purines 0
Putative GGDEF domain protein related to agglutinin secretion 0
Putative Isoquinoline 1-oxidoreductase subunit 0
Putative asociate of RNA polymerase sigma-54 factor rpoN 0
Putrescine/GABA utilization cluster-temporal,to add to SSs 0
Pyridoxine 0
Pyrimidines 0
Pyruvate kinase associated cluster 0
Quinone cofactors 0
Quorum sensing and biofilm formation 0
RNA processing and modification 0
Recombination related cluster 0
Regulation of virulence 0
Related to Menaquinone-cytochrome C reductase 0
Resistance to antibiotics and toxic compounds 0
Reverse electron transport 0
Riboflavin, FMN, FAD 0
Ribosomal Protein L28P relates to a set of uncharacterized proteins 0
Ribosome-related cluster 0
Sarcosine oxidase 0
Selenoproteins 0
Shiga toxin cluster 0
Siderophores 0
Sodium Ion-Coupled Energetics 0
Spore DNA protection 0
Sugar Phosphotransferase Systems, PTS 0
Sugar alcohols 0
Sulfatases and sulfatase modifying factor 1 (and a hypothetical) 0
Tetrapyrroles 0
Three hypotheticals linked to lipoprotein biosynthesis 0
TldD cluster 0
Toxins and superantigens 0
Transcription 0
Translation 0
Transposable elements 0
Triacylglycerols 0
Tricarboxylate transporter 0
Two related proteases 0
Uni- Sym- and Antiporters 0
alpha-proteobacterial cluster of hypotheticals 0
proteosome related 0
recX and regulatory cluster 0
tRNA sulfuration 0
Archaea 5
Bacteria 184233
Eukaryota 81
mgm4575337.3
ABC transporters 0
ATP synthases 0
Acid stress 0
Adhesion 0
Alanine, serine, and glycine 0
Aminosugars 0
Anaerobic degradation of aromatic compounds 0
Arginine; urea cycle, polyamines 0
Aromatic amino acids and derivatives 0
Bacterial cytostatics, differentiation factors and antibiotics 0
Bacteriocins, ribosomally synthesized antibacterial peptides 0
Biologically active compounds in metazoan cell defence and differentiation 0
Biosynthesis of galactoglycans and related lipopolysacharides 0
Biosynthesis of phenylpropanoids 0
Biotin 0
Branched-chain amino acids 0
CO2 fixation 0
CRISPRs and associated hypotheticals 0
CRISPs 0
Capsular and extracellular polysacchrides 0
Carbohydrates 0
Carotenoid biosynthesis 0
Cell Division 0
Cell wall of Mycobacteria 0
Central carbohydrate metabolism 0
Chemotaxis, response regulators 0
Choline bitartrate degradation, putative 0
Chromosome Replication 0
Clustering-based subsystems 0
Coenzyme A 0
Coenzyme B 0
Coenzyme F420 0
Coenzyme M 0
Cold shock 0
Cytochrome biogenesis 0
D-tyrosyl-tRNA(Tyr) deacylase (EC 3.1.-.-) cluster 0
DNA metabolism 0
DNA polymerase III epsilon cluster 0
DNA recombination 0
DNA repair 0
DNA replication 0
DNA uptake, competence 0
Detection 0
Detoxification 0
Di- and oligosaccharides 0
Electron accepting reactions 0
Electron donating reactions 0
Electron transport and photophosphorylation 0
Fatty acid metabolic cluster 0
Fatty acids 0
Fermentation 0
Flagella protein? 0
Flagellar motility in Prokaryota 0
Folate and pterines 0
Gene Transfer Agent (GTA) 0
Glutamine, glutamate, aspartate, asparagine; ammonia assimilation 0
Glycoside hydrolases 0
Gram-Negative cell wall components 0
Gram-Positive cell wall components 0
Heat shock 0
Histidine Metabolism 0
Hypothetical Related to Dihydroorate Dehydrogenase 0
Hypothetical associated with RecF 0
Hypothetical in Lysine biosynthetic cluster 0
Hypothetical lipase related to Phosphatidate metabolism 0
Hypothetical protein possible functionally linked with Alanyl-tRNA synthetase 0
Inorganic sulfur assimilation 0
Invasion and intracellular resistance 0
Isoprenoid/cell wall biosynthesis: PREDICTED UNDECAPRENYL DIPHOSPHATE PHOSPHATASE 0
Isoprenoids 0
Lipid-derived mediators 0
Lipoic acid 0
Lysine Biosynthesis 0
Lysine, threonine, methionine, and cysteine 0
Metabolism of central aromatic intermediates 0
Methylamine utilization 0
Molybdopterin oxidoreductase 0
Monosaccharides 0
NAD and NADP 0
Nucleotidyl-phosphate metabolic cluster 0
One-carbon Metabolism 0
Organic acids 0
Organic sulfur assimilation 0
Osmotic stress 0
Oxidative stress 0
Pathogenicity islands 0
Peripheral pathways for catabolism of aromatic compounds 0
Periplasmic Stress 0
Phages, Prophages 0
Phosphate metabolism 0
Phospholipids 0
Plant Alkaloids 0
Plant Hormones 0
Plant-Prokaryote DOE project 0
Plasmid related functions 0
Polysaccharides 0
Probably GTP or GMP signaling related 0
Probably Pyrimidine biosynthesis-related 0
Probably Ybbk-related hypothetical membrane proteins 0
Probably organic hydroperoxide resistance related hypothetical protein 0
Programmed Cell Death and Toxin-antitoxin Systems 0
Proline and 4-hydroxyproline 0
Proteasome related clusters 0
Protein and nucleoprotein secretion system, Type IV 0
Protein biosynthesis 0
Protein degradation 0
Protein export? 0
Protein folding 0
Protein processing and modification 0
Protein secretion system, Type I 0
Protein secretion system, Type II 0
Protein secretion system, Type III 0
Protein secretion system, Type V 0
Protein secretion system, Type VI 0
Protein secretion system, Type VII (Chaperone/Usher pathway, CU) 0
Protein secretion system, Type VIII (Extracellular nucleation/precipitation pathway, ENP) 0
Protein translocation across cytoplasmic membrane 0
Proteolytic pathway 0
Purines 0
Putative GGDEF domain protein related to agglutinin secretion 0
Putative Isoquinoline 1-oxidoreductase subunit 0
Putative asociate of RNA polymerase sigma-54 factor rpoN 0
Putrescine/GABA utilization cluster-temporal,to add to SSs 0
Pyridoxine 0
Pyrimidines 0
Pyruvate kinase associated cluster 0
Quinone cofactors 0
Quorum sensing and biofilm formation 0
RNA processing and modification 0
Recombination related cluster 0
Regulation of virulence 0
Related to Menaquinone-cytochrome C reductase 0
Resistance to antibiotics and toxic compounds 0
Reverse electron transport 0
Riboflavin, FMN, FAD 0
Ribosomal Protein L28P relates to a set of uncharacterized proteins 0
Ribosome-related cluster 0
Sarcosine oxidase 0
Selenoproteins 0
Shiga toxin cluster 0
Siderophores 0
Sodium Ion-Coupled Energetics 0
Spore DNA protection 0
Sugar Phosphotransferase Systems, PTS 0
Sugar alcohols 0
Sulfatases and sulfatase modifying factor 1 (and a hypothetical) 0
Tetrapyrroles 0
Three hypotheticals linked to lipoprotein biosynthesis 0
TldD cluster 0
Toxins and superantigens 0
Transcription 0
Translation 0
Transposable elements 0
Triacylglycerols 0
Tricarboxylate transporter 0
Two related proteases 0
Uni- Sym- and Antiporters 0
alpha-proteobacterial cluster of hypotheticals 0
proteosome related 0
recX and regulatory cluster 0
tRNA sulfuration 0
Archaea 143
Bacteria 41632
Eukaryota 23
mgm4575338.3
ABC transporters 0
ATP synthases 0
Acid stress 0
Adhesion 0
Alanine, serine, and glycine 0
Aminosugars 0
Anaerobic degradation of aromatic compounds 0
Arginine; urea cycle, polyamines 0
Aromatic amino acids and derivatives 0
Bacterial cytostatics, differentiation factors and antibiotics 0
Bacteriocins, ribosomally synthesized antibacterial peptides 0
Biologically active compounds in metazoan cell defence and differentiation 0
Biosynthesis of galactoglycans and related lipopolysacharides 0
Biosynthesis of phenylpropanoids 0
Biotin 0
Branched-chain amino acids 0
CO2 fixation 0
CRISPRs and associated hypotheticals 0
CRISPs 0
Capsular and extracellular polysacchrides 0
Carbohydrates 0
Carotenoid biosynthesis 0
Cell Division 0
Cell wall of Mycobacteria 0
Central carbohydrate metabolism 0
Chemotaxis, response regulators 0
Choline bitartrate degradation, putative 0
Chromosome Replication 0
Clustering-based subsystems 0
Coenzyme A 0
Coenzyme B 0
Coenzyme F420 0
Coenzyme M 0
Cold shock 0
Cytochrome biogenesis 0
D-tyrosyl-tRNA(Tyr) deacylase (EC 3.1.-.-) cluster 0
DNA metabolism 0
DNA polymerase III epsilon cluster 0
DNA recombination 0
DNA repair 0
DNA replication 0
DNA uptake, competence 0
Detection 0
Detoxification 0
Di- and oligosaccharides 0
Electron accepting reactions 0
Electron donating reactions 0
Electron transport and photophosphorylation 0
Fatty acid metabolic cluster 0
Fatty acids 0
Fermentation 0
Flagella protein? 0
Flagellar motility in Prokaryota 0
Folate and pterines 0
Gene Transfer Agent (GTA) 0
Glutamine, glutamate, aspartate, asparagine; ammonia assimilation 0
Glycoside hydrolases 0
Gram-Negative cell wall components 0
Gram-Positive cell wall components 0
Heat shock 0
Histidine Metabolism 0
Hypothetical Related to Dihydroorate Dehydrogenase 0
Hypothetical associated with RecF 0
Hypothetical in Lysine biosynthetic cluster 0
Hypothetical lipase related to Phosphatidate metabolism 0
Hypothetical protein possible functionally linked with Alanyl-tRNA synthetase 0
Inorganic sulfur assimilation 0
Invasion and intracellular resistance 0
Isoprenoid/cell wall biosynthesis: PREDICTED UNDECAPRENYL DIPHOSPHATE PHOSPHATASE 0
Isoprenoids 0
Lipid-derived mediators 0
Lipoic acid 0
Lysine Biosynthesis 0
Lysine, threonine, methionine, and cysteine 0
Metabolism of central aromatic intermediates 0
Methylamine utilization 0
Molybdopterin oxidoreductase 0
Monosaccharides 0
NAD and NADP 0
Nucleotidyl-phosphate metabolic cluster 0
One-carbon Metabolism 0
Organic acids 0
Organic sulfur assimilation 0
Osmotic stress 0
Oxidative stress 0
Pathogenicity islands 0
Peripheral pathways for catabolism of aromatic compounds 0
Periplasmic Stress 0
Phages, Prophages 0
Phosphate metabolism 0
Phospholipids 0
Plant Alkaloids 0
Plant Hormones 0
Plant-Prokaryote DOE project 0
Plasmid related functions 0
Polysaccharides 0
Probably GTP or GMP signaling related 0
Probably Pyrimidine biosynthesis-related 0
Probably Ybbk-related hypothetical membrane proteins 0
Probably organic hydroperoxide resistance related hypothetical protein 0
Programmed Cell Death and Toxin-antitoxin Systems 0
Proline and 4-hydroxyproline 0
Proteasome related clusters 0
Protein and nucleoprotein secretion system, Type IV 0
Protein biosynthesis 0
Protein degradation 0
Protein export? 0
Protein folding 0
Protein processing and modification 0
Protein secretion system, Type I 0
Protein secretion system, Type II 0
Protein secretion system, Type III 0
Protein secretion system, Type V 0
Protein secretion system, Type VI 0
Protein secretion system, Type VII (Chaperone/Usher pathway, CU) 0
Protein secretion system, Type VIII (Extracellular nucleation/precipitation pathway, ENP) 0
Protein translocation across cytoplasmic membrane 0
Proteolytic pathway 0
Purines 0
Putative GGDEF domain protein related to agglutinin secretion 0
Putative Isoquinoline 1-oxidoreductase subunit 0
Putative asociate of RNA polymerase sigma-54 factor rpoN 0
Putrescine/GABA utilization cluster-temporal,to add to SSs 0
Pyridoxine 0
Pyrimidines 0
Pyruvate kinase associated cluster 0
Quinone cofactors 0
Quorum sensing and biofilm formation 0
RNA processing and modification 0
Recombination related cluster 0
Regulation of virulence 0
Related to Menaquinone-cytochrome C reductase 0
Resistance to antibiotics and toxic compounds 0
Reverse electron transport 0
Riboflavin, FMN, FAD 0
Ribosomal Protein L28P relates to a set of uncharacterized proteins 0
Ribosome-related cluster 0
Sarcosine oxidase 0
Selenoproteins 0
Shiga toxin cluster 0
Siderophores 0
Sodium Ion-Coupled Energetics 0
Spore DNA protection 0
Sugar Phosphotransferase Systems, PTS 0
Sugar alcohols 0
Sulfatases and sulfatase modifying factor 1 (and a hypothetical) 0
Tetrapyrroles 0
Three hypotheticals linked to lipoprotein biosynthesis 0
TldD cluster 0
Toxins and superantigens 0
Transcription 0
Translation 0
Transposable elements 0
Triacylglycerols 0
Tricarboxylate transporter 0
Two related proteases 0
Uni- Sym- and Antiporters 0
alpha-proteobacterial cluster of hypotheticals 0
proteosome related 0
recX and regulatory cluster 0
tRNA sulfuration 0
Archaea 2
Bacteria 104039
Eukaryota 296
mgm4575339.3
ABC transporters 0
ATP synthases 0
Acid stress 0
Adhesion 0
Alanine, serine, and glycine 0
Aminosugars 0
Anaerobic degradation of aromatic compounds 0
Arginine; urea cycle, polyamines 0
Aromatic amino acids and derivatives 0
Bacterial cytostatics, differentiation factors and antibiotics 0
Bacteriocins, ribosomally synthesized antibacterial peptides 0
Biologically active compounds in metazoan cell defence and differentiation 0
Biosynthesis of galactoglycans and related lipopolysacharides 0
Biosynthesis of phenylpropanoids 0
Biotin 0
Branched-chain amino acids 0
CO2 fixation 0
CRISPRs and associated hypotheticals 0
CRISPs 0
Capsular and extracellular polysacchrides 0
Carbohydrates 0
Carotenoid biosynthesis 0
Cell Division 0
Cell wall of Mycobacteria 0
Central carbohydrate metabolism 0
Chemotaxis, response regulators 0
Choline bitartrate degradation, putative 0
Chromosome Replication 0
Clustering-based subsystems 0
Coenzyme A 0
Coenzyme B 0
Coenzyme F420 0
Coenzyme M 0
Cold shock 0
Cytochrome biogenesis 0
D-tyrosyl-tRNA(Tyr) deacylase (EC 3.1.-.-) cluster 0
DNA metabolism 0
DNA polymerase III epsilon cluster 0
DNA recombination 0
DNA repair 0
DNA replication 0
DNA uptake, competence 0
Detection 0
Detoxification 0
Di- and oligosaccharides 0
Electron accepting reactions 0
Electron donating reactions 0
Electron transport and photophosphorylation 0
Fatty acid metabolic cluster 0
Fatty acids 0
Fermentation 0
Flagella protein? 0
Flagellar motility in Prokaryota 0
Folate and pterines 0
Gene Transfer Agent (GTA) 0
Glutamine, glutamate, aspartate, asparagine; ammonia assimilation 0
Glycoside hydrolases 0
Gram-Negative cell wall components 0
Gram-Positive cell wall components 0
Heat shock 0
Histidine Metabolism 0
Hypothetical Related to Dihydroorate Dehydrogenase 0
Hypothetical associated with RecF 0
Hypothetical in Lysine biosynthetic cluster 0
Hypothetical lipase related to Phosphatidate metabolism 0
Hypothetical protein possible functionally linked with Alanyl-tRNA synthetase 0
Inorganic sulfur assimilation 0
Invasion and intracellular resistance 0
Isoprenoid/cell wall biosynthesis: PREDICTED UNDECAPRENYL DIPHOSPHATE PHOSPHATASE 0
Isoprenoids 0
Lipid-derived mediators 0
Lipoic acid 0
Lysine Biosynthesis 0
Lysine, threonine, methionine, and cysteine 0
Metabolism of central aromatic intermediates 0
Methylamine utilization 0
Molybdopterin oxidoreductase 0
Monosaccharides 0
NAD and NADP 0
Nucleotidyl-phosphate metabolic cluster 0
One-carbon Metabolism 0
Organic acids 0
Organic sulfur assimilation 0
Osmotic stress 0
Oxidative stress 0
Pathogenicity islands 0
Peripheral pathways for catabolism of aromatic compounds 0
Periplasmic Stress 0
Phages, Prophages 0
Phosphate metabolism 0
Phospholipids 0
Plant Alkaloids 0
Plant Hormones 0
Plant-Prokaryote DOE project 0
Plasmid related functions 0
Polysaccharides 0
Probably GTP or GMP signaling related 0
Probably Pyrimidine biosynthesis-related 0
Probably Ybbk-related hypothetical membrane proteins 0
Probably organic hydroperoxide resistance related hypothetical protein 0
Programmed Cell Death and Toxin-antitoxin Systems 0
Proline and 4-hydroxyproline 0
Proteasome related clusters 0
Protein and nucleoprotein secretion system, Type IV 0
Protein biosynthesis 0
Protein degradation 0
Protein export? 0
Protein folding 0
Protein processing and modification 0
Protein secretion system, Type I 0
Protein secretion system, Type II 0
Protein secretion system, Type III 0
Protein secretion system, Type V 0
Protein secretion system, Type VI 0
Protein secretion system, Type VII (Chaperone/Usher pathway, CU) 0
Protein secretion system, Type VIII (Extracellular nucleation/precipitation pathway, ENP) 0
Protein translocation across cytoplasmic membrane 0
Proteolytic pathway 0
Purines 0
Putative GGDEF domain protein related to agglutinin secretion 0
Putative Isoquinoline 1-oxidoreductase subunit 0
Putative asociate of RNA polymerase sigma-54 factor rpoN 0
Putrescine/GABA utilization cluster-temporal,to add to SSs 0
Pyridoxine 0
Pyrimidines 0
Pyruvate kinase associated cluster 0
Quinone cofactors 0
Quorum sensing and biofilm formation 0
RNA processing and modification 0
Recombination related cluster 0
Regulation of virulence 0
Related to Menaquinone-cytochrome C reductase 0
Resistance to antibiotics and toxic compounds 0
Reverse electron transport 0
Riboflavin, FMN, FAD 0
Ribosomal Protein L28P relates to a set of uncharacterized proteins 0
Ribosome-related cluster 0
Sarcosine oxidase 0
Selenoproteins 0
Shiga toxin cluster 0
Siderophores 0
Sodium Ion-Coupled Energetics 0
Spore DNA protection 0
Sugar Phosphotransferase Systems, PTS 0
Sugar alcohols 0
Sulfatases and sulfatase modifying factor 1 (and a hypothetical) 0
Tetrapyrroles 0
Three hypotheticals linked to lipoprotein biosynthesis 0
TldD cluster 0
Toxins and superantigens 0
Transcription 0
Translation 0
Transposable elements 0
Triacylglycerols 0
Tricarboxylate transporter 0
Two related proteases 0
Uni- Sym- and Antiporters 0
alpha-proteobacterial cluster of hypotheticals 0
proteosome related 0
recX and regulatory cluster 0
tRNA sulfuration 0
Archaea 7
Bacteria 132356
Eukaryota 67
mgm4575340.3
ABC transporters 0
ATP synthases 0
Acid stress 0
Adhesion 0
Alanine, serine, and glycine 0
Aminosugars 0
Anaerobic degradation of aromatic compounds 0
Arginine; urea cycle, polyamines 0
Aromatic amino acids and derivatives 0
Bacterial cytostatics, differentiation factors and antibiotics 0
Bacteriocins, ribosomally synthesized antibacterial peptides 0
Biologically active compounds in metazoan cell defence and differentiation 0
Biosynthesis of galactoglycans and related lipopolysacharides 0
Biosynthesis of phenylpropanoids 0
Biotin 0
Branched-chain amino acids 0
CO2 fixation 0
CRISPRs and associated hypotheticals 0
CRISPs 0
Capsular and extracellular polysacchrides 0
Carbohydrates 0
Carotenoid biosynthesis 0
Cell Division 0
Cell wall of Mycobacteria 0
Central carbohydrate metabolism 0
Chemotaxis, response regulators 0
Choline bitartrate degradation, putative 0
Chromosome Replication 0
Clustering-based subsystems 0
Coenzyme A 0
Coenzyme B 0
Coenzyme F420 0
Coenzyme M 0
Cold shock 0
Cytochrome biogenesis 0
D-tyrosyl-tRNA(Tyr) deacylase (EC 3.1.-.-) cluster 0
DNA metabolism 0
DNA polymerase III epsilon cluster 0
DNA recombination 0
DNA repair 0
DNA replication 0
DNA uptake, competence 0
Detection 0
Detoxification 0
Di- and oligosaccharides 0
Electron accepting reactions 0
Electron donating reactions 0
Electron transport and photophosphorylation 0
Fatty acid metabolic cluster 0
Fatty acids 0
Fermentation 0
Flagella protein? 0
Flagellar motility in Prokaryota 0
Folate and pterines 0
Gene Transfer Agent (GTA) 0
Glutamine, glutamate, aspartate, asparagine; ammonia assimilation 0
Glycoside hydrolases 0
Gram-Negative cell wall components 0
Gram-Positive cell wall components 0
Heat shock 0
Histidine Metabolism 0
Hypothetical Related to Dihydroorate Dehydrogenase 0
Hypothetical associated with RecF 0
Hypothetical in Lysine biosynthetic cluster 0
Hypothetical lipase related to Phosphatidate metabolism 0
Hypothetical protein possible functionally linked with Alanyl-tRNA synthetase 0
Inorganic sulfur assimilation 0
Invasion and intracellular resistance 0
Isoprenoid/cell wall biosynthesis: PREDICTED UNDECAPRENYL DIPHOSPHATE PHOSPHATASE 0
Isoprenoids 0
Lipid-derived mediators 0
Lipoic acid 0
Lysine Biosynthesis 0
Lysine, threonine, methionine, and cysteine 0
Metabolism of central aromatic intermediates 0
Methylamine utilization 0
Molybdopterin oxidoreductase 0
Monosaccharides 0
NAD and NADP 0
Nucleotidyl-phosphate metabolic cluster 0
One-carbon Metabolism 0
Organic acids 0
Organic sulfur assimilation 0
Osmotic stress 0
Oxidative stress 0
Pathogenicity islands 0
Peripheral pathways for catabolism of aromatic compounds 0
Periplasmic Stress 0
Phages, Prophages 0
Phosphate metabolism 0
Phospholipids 0
Plant Alkaloids 0
Plant Hormones 0
Plant-Prokaryote DOE project 0
Plasmid related functions 0
Polysaccharides 0
Probably GTP or GMP signaling related 0
Probably Pyrimidine biosynthesis-related 0
Probably Ybbk-related hypothetical membrane proteins 0
Probably organic hydroperoxide resistance related hypothetical protein 0
Programmed Cell Death and Toxin-antitoxin Systems 0
Proline and 4-hydroxyproline 0
Proteasome related clusters 0
Protein and nucleoprotein secretion system, Type IV 0
Protein biosynthesis 0
Protein degradation 0
Protein export? 0
Protein folding 0
Protein processing and modification 0
Protein secretion system, Type I 0
Protein secretion system, Type II 0
Protein secretion system, Type III 0
Protein secretion system, Type V 0
Protein secretion system, Type VI 0
Protein secretion system, Type VII (Chaperone/Usher pathway, CU) 0
Protein secretion system, Type VIII (Extracellular nucleation/precipitation pathway, ENP) 0
Protein translocation across cytoplasmic membrane 0
Proteolytic pathway 0
Purines 0
Putative GGDEF domain protein related to agglutinin secretion 0
Putative Isoquinoline 1-oxidoreductase subunit 0
Putative asociate of RNA polymerase sigma-54 factor rpoN 0
Putrescine/GABA utilization cluster-temporal,to add to SSs 0
Pyridoxine 0
Pyrimidines 0
Pyruvate kinase associated cluster 0
Quinone cofactors 0
Quorum sensing and biofilm formation 0
RNA processing and modification 0
Recombination related cluster 0
Regulation of virulence 0
Related to Menaquinone-cytochrome C reductase 0
Resistance to antibiotics and toxic compounds 0
Reverse electron transport 0
Riboflavin, FMN, FAD 0
Ribosomal Protein L28P relates to a set of uncharacterized proteins 0
Ribosome-related cluster 0
Sarcosine oxidase 0
Selenoproteins 0
Shiga toxin cluster 0
Siderophores 0
Sodium Ion-Coupled Energetics 0
Spore DNA protection 0
Sugar Phosphotransferase Systems, PTS 0
Sugar alcohols 0
Sulfatases and sulfatase modifying factor 1 (and a hypothetical) 0
Tetrapyrroles 0
Three hypotheticals linked to lipoprotein biosynthesis 0
TldD cluster 0
Toxins and superantigens 0
Transcription 0
Translation 0
Transposable elements 0
Triacylglycerols 0
Tricarboxylate transporter 0
Two related proteases 0
Uni- Sym- and Antiporters 0
alpha-proteobacterial cluster of hypotheticals 0
proteosome related 0
recX and regulatory cluster 0
tRNA sulfuration 0
Archaea 4
Bacteria 125248
Eukaryota 9
mgm4575341.3
ABC transporters 0
ATP synthases 0
Acid stress 0
Adhesion 0
Alanine, serine, and glycine 0
Aminosugars 0
Anaerobic degradation of aromatic compounds 0
Arginine; urea cycle, polyamines 0
Aromatic amino acids and derivatives 0
Bacterial cytostatics, differentiation factors and antibiotics 0
Bacteriocins, ribosomally synthesized antibacterial peptides 0
Biologically active compounds in metazoan cell defence and differentiation 0
Biosynthesis of galactoglycans and related lipopolysacharides 0
Biosynthesis of phenylpropanoids 0
Biotin 0
Branched-chain amino acids 0
CO2 fixation 0
CRISPRs and associated hypotheticals 0
CRISPs 0
Capsular and extracellular polysacchrides 0
Carbohydrates 0
Carotenoid biosynthesis 0
Cell Division 0
Cell wall of Mycobacteria 0
Central carbohydrate metabolism 0
Chemotaxis, response regulators 0
Choline bitartrate degradation, putative 0
Chromosome Replication 0
Clustering-based subsystems 0
Coenzyme A 0
Coenzyme B 0
Coenzyme F420 0
Coenzyme M 0
Cold shock 0
Cytochrome biogenesis 0
D-tyrosyl-tRNA(Tyr) deacylase (EC 3.1.-.-) cluster 0
DNA metabolism 0
DNA polymerase III epsilon cluster 0
DNA recombination 0
DNA repair 0
DNA replication 0
DNA uptake, competence 0
Detection 0
Detoxification 0
Di- and oligosaccharides 0
Electron accepting reactions 0
Electron donating reactions 0
Electron transport and photophosphorylation 0
Fatty acid metabolic cluster 0
Fatty acids 0
Fermentation 0
Flagella protein? 0
Flagellar motility in Prokaryota 0
Folate and pterines 0
Gene Transfer Agent (GTA) 0
Glutamine, glutamate, aspartate, asparagine; ammonia assimilation 0
Glycoside hydrolases 0
Gram-Negative cell wall components 0
Gram-Positive cell wall components 0
Heat shock 0
Histidine Metabolism 0
Hypothetical Related to Dihydroorate Dehydrogenase 0
Hypothetical associated with RecF 0
Hypothetical in Lysine biosynthetic cluster 0
Hypothetical lipase related to Phosphatidate metabolism 0
Hypothetical protein possible functionally linked with Alanyl-tRNA synthetase 0
Inorganic sulfur assimilation 0
Invasion and intracellular resistance 0
Isoprenoid/cell wall biosynthesis: PREDICTED UNDECAPRENYL DIPHOSPHATE PHOSPHATASE 0
Isoprenoids 0
Lipid-derived mediators 0
Lipoic acid 0
Lysine Biosynthesis 0
Lysine, threonine, methionine, and cysteine 0
Metabolism of central aromatic intermediates 0
Methylamine utilization 0
Molybdopterin oxidoreductase 0
Monosaccharides 0
NAD and NADP 0
Nucleotidyl-phosphate metabolic cluster 0
One-carbon Metabolism 0
Organic acids 0
Organic sulfur assimilation 0
Osmotic stress 0
Oxidative stress 0
Pathogenicity islands 0
Peripheral pathways for catabolism of aromatic compounds 0
Periplasmic Stress 0
Phages, Prophages 0
Phosphate metabolism 0
Phospholipids 0
Plant Alkaloids 0
Plant Hormones 0
Plant-Prokaryote DOE project 0
Plasmid related functions 0
Polysaccharides 0
Probably GTP or GMP signaling related 0
Probably Pyrimidine biosynthesis-related 0
Probably Ybbk-related hypothetical membrane proteins 0
Probably organic hydroperoxide resistance related hypothetical protein 0
Programmed Cell Death and Toxin-antitoxin Systems 0
Proline and 4-hydroxyproline 0
Proteasome related clusters 0
Protein and nucleoprotein secretion system, Type IV 0
Protein biosynthesis 0
Protein degradation 0
Protein export? 0
Protein folding 0
Protein processing and modification 0
Protein secretion system, Type I 0
Protein secretion system, Type II 0
Protein secretion system, Type III 0
Protein secretion system, Type V 0
Protein secretion system, Type VI 0
Protein secretion system, Type VII (Chaperone/Usher pathway, CU) 0
Protein secretion system, Type VIII (Extracellular nucleation/precipitation pathway, ENP) 0
Protein translocation across cytoplasmic membrane 0
Proteolytic pathway 0
Purines 0
Putative GGDEF domain protein related to agglutinin secretion 0
Putative Isoquinoline 1-oxidoreductase subunit 0
Putative asociate of RNA polymerase sigma-54 factor rpoN 0
Putrescine/GABA utilization cluster-temporal,to add to SSs 0
Pyridoxine 0
Pyrimidines 0
Pyruvate kinase associated cluster 0
Quinone cofactors 0
Quorum sensing and biofilm formation 0
RNA processing and modification 0
Recombination related cluster 0
Regulation of virulence 0
Related to Menaquinone-cytochrome C reductase 0
Resistance to antibiotics and toxic compounds 0
Reverse electron transport 0
Riboflavin, FMN, FAD 0
Ribosomal Protein L28P relates to a set of uncharacterized proteins 0
Ribosome-related cluster 0
Sarcosine oxidase 0
Selenoproteins 0
Shiga toxin cluster 0
Siderophores 0
Sodium Ion-Coupled Energetics 0
Spore DNA protection 0
Sugar Phosphotransferase Systems, PTS 0
Sugar alcohols 0
Sulfatases and sulfatase modifying factor 1 (and a hypothetical) 0
Tetrapyrroles 0
Three hypotheticals linked to lipoprotein biosynthesis 0
TldD cluster 0
Toxins and superantigens 0
Transcription 0
Translation 0
Transposable elements 0
Triacylglycerols 0
Tricarboxylate transporter 0
Two related proteases 0
Uni- Sym- and Antiporters 0
alpha-proteobacterial cluster of hypotheticals 0
proteosome related 0
recX and regulatory cluster 0
tRNA sulfuration 0
Archaea 1
Bacteria 59671
Eukaryota 333
mgm4575342.3
ABC transporters 0
ATP synthases 0
Acid stress 0
Adhesion 0
Alanine, serine, and glycine 0
Aminosugars 0
Anaerobic degradation of aromatic compounds 0
Arginine; urea cycle, polyamines 0
Aromatic amino acids and derivatives 0
Bacterial cytostatics, differentiation factors and antibiotics 0
Bacteriocins, ribosomally synthesized antibacterial peptides 0
Biologically active compounds in metazoan cell defence and differentiation 0
Biosynthesis of galactoglycans and related lipopolysacharides 0
Biosynthesis of phenylpropanoids 0
Biotin 0
Branched-chain amino acids 0
CO2 fixation 0
CRISPRs and associated hypotheticals 0
CRISPs 0
Capsular and extracellular polysacchrides 0
Carbohydrates 0
Carotenoid biosynthesis 0
Cell Division 0
Cell wall of Mycobacteria 0
Central carbohydrate metabolism 0
Chemotaxis, response regulators 0
Choline bitartrate degradation, putative 0
Chromosome Replication 0
Clustering-based subsystems 0
Coenzyme A 0
Coenzyme B 0
Coenzyme F420 0
Coenzyme M 0
Cold shock 0
Cytochrome biogenesis 0
D-tyrosyl-tRNA(Tyr) deacylase (EC 3.1.-.-) cluster 0
DNA metabolism 0
DNA polymerase III epsilon cluster 0
DNA recombination 0
DNA repair 0
DNA replication 0
DNA uptake, competence 0
Detection 0
Detoxification 0
Di- and oligosaccharides 0
Electron accepting reactions 0
Electron donating reactions 0
Electron transport and photophosphorylation 0
Fatty acid metabolic cluster 0
Fatty acids 0
Fermentation 0
Flagella protein? 0
Flagellar motility in Prokaryota 0
Folate and pterines 0
Gene Transfer Agent (GTA) 0
Glutamine, glutamate, aspartate, asparagine; ammonia assimilation 0
Glycoside hydrolases 0
Gram-Negative cell wall components 0
Gram-Positive cell wall components 0
Heat shock 0
Histidine Metabolism 0
Hypothetical Related to Dihydroorate Dehydrogenase 0
Hypothetical associated with RecF 0
Hypothetical in Lysine biosynthetic cluster 0
Hypothetical lipase related to Phosphatidate metabolism 0
Hypothetical protein possible functionally linked with Alanyl-tRNA synthetase 0
Inorganic sulfur assimilation 0
Invasion and intracellular resistance 0
Isoprenoid/cell wall biosynthesis: PREDICTED UNDECAPRENYL DIPHOSPHATE PHOSPHATASE 0
Isoprenoids 0
Lipid-derived mediators 0
Lipoic acid 0
Lysine Biosynthesis 0
Lysine, threonine, methionine, and cysteine 0
Metabolism of central aromatic intermediates 0
Methylamine utilization 0
Molybdopterin oxidoreductase 0
Monosaccharides 0
NAD and NADP 0
Nucleotidyl-phosphate metabolic cluster 0
One-carbon Metabolism 0
Organic acids 0
Organic sulfur assimilation 0
Osmotic stress 0
Oxidative stress 0
Pathogenicity islands 0
Peripheral pathways for catabolism of aromatic compounds 0
Periplasmic Stress 0
Phages, Prophages 0
Phosphate metabolism 0
Phospholipids 0
Plant Alkaloids 0
Plant Hormones 0
Plant-Prokaryote DOE project 0
Plasmid related functions 0
Polysaccharides 0
Probably GTP or GMP signaling related 0
Probably Pyrimidine biosynthesis-related 0
Probably Ybbk-related hypothetical membrane proteins 0
Probably organic hydroperoxide resistance related hypothetical protein 0
Programmed Cell Death and Toxin-antitoxin Systems 0
Proline and 4-hydroxyproline 0
Proteasome related clusters 0
Protein and nucleoprotein secretion system, Type IV 0
Protein biosynthesis 0
Protein degradation 0
Protein export? 0
Protein folding 0
Protein processing and modification 0
Protein secretion system, Type I 0
Protein secretion system, Type II 0
Protein secretion system, Type III 0
Protein secretion system, Type V 0
Protein secretion system, Type VI 0
Protein secretion system, Type VII (Chaperone/Usher pathway, CU) 0
Protein secretion system, Type VIII (Extracellular nucleation/precipitation pathway, ENP) 0
Protein translocation across cytoplasmic membrane 0
Proteolytic pathway 0
Purines 0
Putative GGDEF domain protein related to agglutinin secretion 0
Putative Isoquinoline 1-oxidoreductase subunit 0
Putative asociate of RNA polymerase sigma-54 factor rpoN 0
Putrescine/GABA utilization cluster-temporal,to add to SSs 0
Pyridoxine 0
Pyrimidines 0
Pyruvate kinase associated cluster 0
Quinone cofactors 0
Quorum sensing and biofilm formation 0
RNA processing and modification 0
Recombination related cluster 0
Regulation of virulence 0
Related to Menaquinone-cytochrome C reductase 0
Resistance to antibiotics and toxic compounds 0
Reverse electron transport 0
Riboflavin, FMN, FAD 0
Ribosomal Protein L28P relates to a set of uncharacterized proteins 0
Ribosome-related cluster 0
Sarcosine oxidase 0
Selenoproteins 0
Shiga toxin cluster 0
Siderophores 0
Sodium Ion-Coupled Energetics 0
Spore DNA protection 0
Sugar Phosphotransferase Systems, PTS 0
Sugar alcohols 0
Sulfatases and sulfatase modifying factor 1 (and a hypothetical) 0
Tetrapyrroles 0
Three hypotheticals linked to lipoprotein biosynthesis 0
TldD cluster 0
Toxins and superantigens 0
Transcription 0
Translation 0
Transposable elements 0
Triacylglycerols 0
Tricarboxylate transporter 0
Two related proteases 0
Uni- Sym- and Antiporters 0
alpha-proteobacterial cluster of hypotheticals 0
proteosome related 0
recX and regulatory cluster 0
tRNA sulfuration 0
Archaea 0
Bacteria 104783
Eukaryota 621
mgm4575343.3
ABC transporters 0
ATP synthases 0
Acid stress 0
Adhesion 0
Alanine, serine, and glycine 0
Aminosugars 0
Anaerobic degradation of aromatic compounds 0
Arginine; urea cycle, polyamines 0
Aromatic amino acids and derivatives 0
Bacterial cytostatics, differentiation factors and antibiotics 0
Bacteriocins, ribosomally synthesized antibacterial peptides 0
Biologically active compounds in metazoan cell defence and differentiation 0
Biosynthesis of galactoglycans and related lipopolysacharides 0
Biosynthesis of phenylpropanoids 0
Biotin 0
Branched-chain amino acids 0
CO2 fixation 0
CRISPRs and associated hypotheticals 0
CRISPs 0
Capsular and extracellular polysacchrides 0
Carbohydrates 0
Carotenoid biosynthesis 0
Cell Division 0
Cell wall of Mycobacteria 0
Central carbohydrate metabolism 0
Chemotaxis, response regulators 0
Choline bitartrate degradation, putative 0
Chromosome Replication 0
Clustering-based subsystems 0
Coenzyme A 0
Coenzyme B 0
Coenzyme F420 0
Coenzyme M 0
Cold shock 0
Cytochrome biogenesis 0
D-tyrosyl-tRNA(Tyr) deacylase (EC 3.1.-.-) cluster 0
DNA metabolism 0
DNA polymerase III epsilon cluster 0
DNA recombination 0
DNA repair 0
DNA replication 0
DNA uptake, competence 0
Detection 0
Detoxification 0
Di- and oligosaccharides 0
Electron accepting reactions 0
Electron donating reactions 0
Electron transport and photophosphorylation 0
Fatty acid metabolic cluster 0
Fatty acids 0
Fermentation 0
Flagella protein? 0
Flagellar motility in Prokaryota 0
Folate and pterines 0
Gene Transfer Agent (GTA) 0
Glutamine, glutamate, aspartate, asparagine; ammonia assimilation 0
Glycoside hydrolases 0
Gram-Negative cell wall components 0
Gram-Positive cell wall components 0
Heat shock 0
Histidine Metabolism 0
Hypothetical Related to Dihydroorate Dehydrogenase 0
Hypothetical associated with RecF 0
Hypothetical in Lysine biosynthetic cluster 0
Hypothetical lipase related to Phosphatidate metabolism 0
Hypothetical protein possible functionally linked with Alanyl-tRNA synthetase 0
Inorganic sulfur assimilation 0
Invasion and intracellular resistance 0
Isoprenoid/cell wall biosynthesis: PREDICTED UNDECAPRENYL DIPHOSPHATE PHOSPHATASE 0
Isoprenoids 0
Lipid-derived mediators 0
Lipoic acid 0
Lysine Biosynthesis 0
Lysine, threonine, methionine, and cysteine 0
Metabolism of central aromatic intermediates 0
Methylamine utilization 0
Molybdopterin oxidoreductase 0
Monosaccharides 0
NAD and NADP 0
Nucleotidyl-phosphate metabolic cluster 0
One-carbon Metabolism 0
Organic acids 0
Organic sulfur assimilation 0
Osmotic stress 0
Oxidative stress 0
Pathogenicity islands 0
Peripheral pathways for catabolism of aromatic compounds 0
Periplasmic Stress 0
Phages, Prophages 0
Phosphate metabolism 0
Phospholipids 0
Plant Alkaloids 0
Plant Hormones 0
Plant-Prokaryote DOE project 0
Plasmid related functions 0
Polysaccharides 0
Probably GTP or GMP signaling related 0
Probably Pyrimidine biosynthesis-related 0
Probably Ybbk-related hypothetical membrane proteins 0
Probably organic hydroperoxide resistance related hypothetical protein 0
Programmed Cell Death and Toxin-antitoxin Systems 0
Proline and 4-hydroxyproline 0
Proteasome related clusters 0
Protein and nucleoprotein secretion system, Type IV 0
Protein biosynthesis 0
Protein degradation 0
Protein export? 0
Protein folding 0
Protein processing and modification 0
Protein secretion system, Type I 0
Protein secretion system, Type II 0
Protein secretion system, Type III 0
Protein secretion system, Type V 0
Protein secretion system, Type VI 0
Protein secretion system, Type VII (Chaperone/Usher pathway, CU) 0
Protein secretion system, Type VIII (Extracellular nucleation/precipitation pathway, ENP) 0
Protein translocation across cytoplasmic membrane 0
Proteolytic pathway 0
Purines 0
Putative GGDEF domain protein related to agglutinin secretion 0
Putative Isoquinoline 1-oxidoreductase subunit 0
Putative asociate of RNA polymerase sigma-54 factor rpoN 0
Putrescine/GABA utilization cluster-temporal,to add to SSs 0
Pyridoxine 0
Pyrimidines 0
Pyruvate kinase associated cluster 0
Quinone cofactors 0
Quorum sensing and biofilm formation 0
RNA processing and modification 0
Recombination related cluster 0
Regulation of virulence 0
Related to Menaquinone-cytochrome C reductase 0
Resistance to antibiotics and toxic compounds 0
Reverse electron transport 0
Riboflavin, FMN, FAD 0
Ribosomal Protein L28P relates to a set of uncharacterized proteins 0
Ribosome-related cluster 0
Sarcosine oxidase 0
Selenoproteins 0
Shiga toxin cluster 0
Siderophores 0
Sodium Ion-Coupled Energetics 0
Spore DNA protection 0
Sugar Phosphotransferase Systems, PTS 0
Sugar alcohols 0
Sulfatases and sulfatase modifying factor 1 (and a hypothetical) 0
Tetrapyrroles 0
Three hypotheticals linked to lipoprotein biosynthesis 0
TldD cluster 0
Toxins and superantigens 0
Transcription 0
Translation 0
Transposable elements 0
Triacylglycerols 0
Tricarboxylate transporter 0
Two related proteases 0
Uni- Sym- and Antiporters 0
alpha-proteobacterial cluster of hypotheticals 0
proteosome related 0
recX and regulatory cluster 0
tRNA sulfuration 0
Archaea 493
Bacteria 148494
Eukaryota 1
mgm4575344.3
ABC transporters 0
ATP synthases 0
Acid stress 0
Adhesion 0
Alanine, serine, and glycine 0
Aminosugars 0
Anaerobic degradation of aromatic compounds 0
Arginine; urea cycle, polyamines 0
Aromatic amino acids and derivatives 0
Bacterial cytostatics, differentiation factors and antibiotics 0
Bacteriocins, ribosomally synthesized antibacterial peptides 0
Biologically active compounds in metazoan cell defence and differentiation 0
Biosynthesis of galactoglycans and related lipopolysacharides 0
Biosynthesis of phenylpropanoids 0
Biotin 0
Branched-chain amino acids 0
CO2 fixation 0
CRISPRs and associated hypotheticals 0
CRISPs 0
Capsular and extracellular polysacchrides 0
Carbohydrates 0
Carotenoid biosynthesis 0
Cell Division 0
Cell wall of Mycobacteria 0
Central carbohydrate metabolism 0
Chemotaxis, response regulators 0
Choline bitartrate degradation, putative 0
Chromosome Replication 0
Clustering-based subsystems 0
Coenzyme A 0
Coenzyme B 0
Coenzyme F420 0
Coenzyme M 0
Cold shock 0
Cytochrome biogenesis 0
D-tyrosyl-tRNA(Tyr) deacylase (EC 3.1.-.-) cluster 0
DNA metabolism 0
DNA polymerase III epsilon cluster 0
DNA recombination 0
DNA repair 0
DNA replication 0
DNA uptake, competence 0
Detection 0
Detoxification 0
Di- and oligosaccharides 0
Electron accepting reactions 0
Electron donating reactions 0
Electron transport and photophosphorylation 0
Fatty acid metabolic cluster 0
Fatty acids 0
Fermentation 0
Flagella protein? 0
Flagellar motility in Prokaryota 0
Folate and pterines 0
Gene Transfer Agent (GTA) 0
Glutamine, glutamate, aspartate, asparagine; ammonia assimilation 0
Glycoside hydrolases 0
Gram-Negative cell wall components 0
Gram-Positive cell wall components 0
Heat shock 0
Histidine Metabolism 0
Hypothetical Related to Dihydroorate Dehydrogenase 0
Hypothetical associated with RecF 0
Hypothetical in Lysine biosynthetic cluster 0
Hypothetical lipase related to Phosphatidate metabolism 0
Hypothetical protein possible functionally linked with Alanyl-tRNA synthetase 0
Inorganic sulfur assimilation 0
Invasion and intracellular resistance 0
Isoprenoid/cell wall biosynthesis: PREDICTED UNDECAPRENYL DIPHOSPHATE PHOSPHATASE 0
Isoprenoids 0
Lipid-derived mediators 0
Lipoic acid 0
Lysine Biosynthesis 0
Lysine, threonine, methionine, and cysteine 0
Metabolism of central aromatic intermediates 0
Methylamine utilization 0
Molybdopterin oxidoreductase 0
Monosaccharides 0
NAD and NADP 0
Nucleotidyl-phosphate metabolic cluster 0
One-carbon Metabolism 0
Organic acids 0
Organic sulfur assimilation 0
Osmotic stress 0
Oxidative stress 0
Pathogenicity islands 0
Peripheral pathways for catabolism of aromatic compounds 0
Periplasmic Stress 0
Phages, Prophages 0
Phosphate metabolism 0
Phospholipids 0
Plant Alkaloids 0
Plant Hormones 0
Plant-Prokaryote DOE project 0
Plasmid related functions 0
Polysaccharides 0
Probably GTP or GMP signaling related 0
Probably Pyrimidine biosynthesis-related 0
Probably Ybbk-related hypothetical membrane proteins 0
Probably organic hydroperoxide resistance related hypothetical protein 0
Programmed Cell Death and Toxin-antitoxin Systems 0
Proline and 4-hydroxyproline 0
Proteasome related clusters 0
Protein and nucleoprotein secretion system, Type IV 0
Protein biosynthesis 0
Protein degradation 0
Protein export? 0
Protein folding 0
Protein processing and modification 0
Protein secretion system, Type I 0
Protein secretion system, Type II 0
Protein secretion system, Type III 0
Protein secretion system, Type V 0
Protein secretion system, Type VI 0
Protein secretion system, Type VII (Chaperone/Usher pathway, CU) 0
Protein secretion system, Type VIII (Extracellular nucleation/precipitation pathway, ENP) 0
Protein translocation across cytoplasmic membrane 0
Proteolytic pathway 0
Purines 0
Putative GGDEF domain protein related to agglutinin secretion 0
Putative Isoquinoline 1-oxidoreductase subunit 0
Putative asociate of RNA polymerase sigma-54 factor rpoN 0
Putrescine/GABA utilization cluster-temporal,to add to SSs 0
Pyridoxine 0
Pyrimidines 0
Pyruvate kinase associated cluster 0
Quinone cofactors 0
Quorum sensing and biofilm formation 0
RNA processing and modification 0
Recombination related cluster 0
Regulation of virulence 0
Related to Menaquinone-cytochrome C reductase 0
Resistance to antibiotics and toxic compounds 0
Reverse electron transport 0
Riboflavin, FMN, FAD 0
Ribosomal Protein L28P relates to a set of uncharacterized proteins 0
Ribosome-related cluster 0
Sarcosine oxidase 0
Selenoproteins 0
Shiga toxin cluster 0
Siderophores 0
Sodium Ion-Coupled Energetics 0
Spore DNA protection 0
Sugar Phosphotransferase Systems, PTS 0
Sugar alcohols 0
Sulfatases and sulfatase modifying factor 1 (and a hypothetical) 0
Tetrapyrroles 0
Three hypotheticals linked to lipoprotein biosynthesis 0
TldD cluster 0
Toxins and superantigens 0
Transcription 0
Translation 0
Transposable elements 0
Triacylglycerols 0
Tricarboxylate transporter 0
Two related proteases 0
Uni- Sym- and Antiporters 0
alpha-proteobacterial cluster of hypotheticals 0
proteosome related 0
recX and regulatory cluster 0
tRNA sulfuration 0
Archaea 4882
Bacteria 266691
Eukaryota 6458
mgm4575345.3
ABC transporters 0
ATP synthases 0
Acid stress 0
Adhesion 0
Alanine, serine, and glycine 0
Aminosugars 0
Anaerobic degradation of aromatic compounds 0
Arginine; urea cycle, polyamines 0
Aromatic amino acids and derivatives 0
Bacterial cytostatics, differentiation factors and antibiotics 0
Bacteriocins, ribosomally synthesized antibacterial peptides 0
Biologically active compounds in metazoan cell defence and differentiation 0
Biosynthesis of galactoglycans and related lipopolysacharides 0
Biosynthesis of phenylpropanoids 0
Biotin 0
Branched-chain amino acids 0
CO2 fixation 0
CRISPRs and associated hypotheticals 0
CRISPs 0
Capsular and extracellular polysacchrides 0
Carbohydrates 0
Carotenoid biosynthesis 0
Cell Division 0
Cell wall of Mycobacteria 0
Central carbohydrate metabolism 0
Chemotaxis, response regulators 0
Choline bitartrate degradation, putative 0
Chromosome Replication 0
Clustering-based subsystems 0
Coenzyme A 0
Coenzyme B 0
Coenzyme F420 0
Coenzyme M 0
Cold shock 0
Cytochrome biogenesis 0
D-tyrosyl-tRNA(Tyr) deacylase (EC 3.1.-.-) cluster 0
DNA metabolism 0
DNA polymerase III epsilon cluster 0
DNA recombination 0
DNA repair 0
DNA replication 0
DNA uptake, competence 0
Detection 0
Detoxification 0
Di- and oligosaccharides 0
Electron accepting reactions 0
Electron donating reactions 0
Electron transport and photophosphorylation 0
Fatty acid metabolic cluster 0
Fatty acids 0
Fermentation 0
Flagella protein? 0
Flagellar motility in Prokaryota 0
Folate and pterines 0
Gene Transfer Agent (GTA) 0
Glutamine, glutamate, aspartate, asparagine; ammonia assimilation 0
Glycoside hydrolases 0
Gram-Negative cell wall components 0
Gram-Positive cell wall components 0
Heat shock 0
Histidine Metabolism 0
Hypothetical Related to Dihydroorate Dehydrogenase 0
Hypothetical associated with RecF 0
Hypothetical in Lysine biosynthetic cluster 0
Hypothetical lipase related to Phosphatidate metabolism 0
Hypothetical protein possible functionally linked with Alanyl-tRNA synthetase 0
Inorganic sulfur assimilation 0
Invasion and intracellular resistance 0
Isoprenoid/cell wall biosynthesis: PREDICTED UNDECAPRENYL DIPHOSPHATE PHOSPHATASE 0
Isoprenoids 0
Lipid-derived mediators 0
Lipoic acid 0
Lysine Biosynthesis 0
Lysine, threonine, methionine, and cysteine 0
Metabolism of central aromatic intermediates 0
Methylamine utilization 0
Molybdopterin oxidoreductase 0
Monosaccharides 0
NAD and NADP 0
Nucleotidyl-phosphate metabolic cluster 0
One-carbon Metabolism 0
Organic acids 0
Organic sulfur assimilation 0
Osmotic stress 0
Oxidative stress 0
Pathogenicity islands 0
Peripheral pathways for catabolism of aromatic compounds 0
Periplasmic Stress 0
Phages, Prophages 0
Phosphate metabolism 0
Phospholipids 0
Plant Alkaloids 0
Plant Hormones 0
Plant-Prokaryote DOE project 0
Plasmid related functions 0
Polysaccharides 0
Probably GTP or GMP signaling related 0
Probably Pyrimidine biosynthesis-related 0
Probably Ybbk-related hypothetical membrane proteins 0
Probably organic hydroperoxide resistance related hypothetical protein 0
Programmed Cell Death and Toxin-antitoxin Systems 0
Proline and 4-hydroxyproline 0
Proteasome related clusters 0
Protein and nucleoprotein secretion system, Type IV 0
Protein biosynthesis 0
Protein degradation 0
Protein export? 0
Protein folding 0
Protein processing and modification 0
Protein secretion system, Type I 0
Protein secretion system, Type II 0
Protein secretion system, Type III 0
Protein secretion system, Type V 0
Protein secretion system, Type VI 0
Protein secretion system, Type VII (Chaperone/Usher pathway, CU) 0
Protein secretion system, Type VIII (Extracellular nucleation/precipitation pathway, ENP) 0
Protein translocation across cytoplasmic membrane 0
Proteolytic pathway 0
Purines 0
Putative GGDEF domain protein related to agglutinin secretion 0
Putative Isoquinoline 1-oxidoreductase subunit 0
Putative asociate of RNA polymerase sigma-54 factor rpoN 0
Putrescine/GABA utilization cluster-temporal,to add to SSs 0
Pyridoxine 0
Pyrimidines 0
Pyruvate kinase associated cluster 0
Quinone cofactors 0
Quorum sensing and biofilm formation 0
RNA processing and modification 0
Recombination related cluster 0
Regulation of virulence 0
Related to Menaquinone-cytochrome C reductase 0
Resistance to antibiotics and toxic compounds 0
Reverse electron transport 0
Riboflavin, FMN, FAD 0
Ribosomal Protein L28P relates to a set of uncharacterized proteins 0
Ribosome-related cluster 0
Sarcosine oxidase 0
Selenoproteins 0
Shiga toxin cluster 0
Siderophores 0
Sodium Ion-Coupled Energetics 0
Spore DNA protection 0
Sugar Phosphotransferase Systems, PTS 0
Sugar alcohols 0
Sulfatases and sulfatase modifying factor 1 (and a hypothetical) 0
Tetrapyrroles 0
Three hypotheticals linked to lipoprotein biosynthesis 0
TldD cluster 0
Toxins and superantigens 0
Transcription 0
Translation 0
Transposable elements 0
Triacylglycerols 0
Tricarboxylate transporter 0
Two related proteases 0
Uni- Sym- and Antiporters 0
alpha-proteobacterial cluster of hypotheticals 0
proteosome related 0
recX and regulatory cluster 0
tRNA sulfuration 0
Archaea 559
Bacteria 187155
Eukaryota 82
mgm4575346.3
ABC transporters 0
ATP synthases 0
Acid stress 0
Adhesion 0
Alanine, serine, and glycine 0
Aminosugars 0
Anaerobic degradation of aromatic compounds 0
Arginine; urea cycle, polyamines 0
Aromatic amino acids and derivatives 0
Bacterial cytostatics, differentiation factors and antibiotics 0
Bacteriocins, ribosomally synthesized antibacterial peptides 0
Biologically active compounds in metazoan cell defence and differentiation 0
Biosynthesis of galactoglycans and related lipopolysacharides 0
Biosynthesis of phenylpropanoids 0
Biotin 0
Branched-chain amino acids 0
CO2 fixation 0
CRISPRs and associated hypotheticals 0
CRISPs 0
Capsular and extracellular polysacchrides 0
Carbohydrates 0
Carotenoid biosynthesis 0
Cell Division 0
Cell wall of Mycobacteria 0
Central carbohydrate metabolism 0
Chemotaxis, response regulators 0
Choline bitartrate degradation, putative 0
Chromosome Replication 0
Clustering-based subsystems 0
Coenzyme A 0
Coenzyme B 0
Coenzyme F420 0
Coenzyme M 0
Cold shock 0
Cytochrome biogenesis 0
D-tyrosyl-tRNA(Tyr) deacylase (EC 3.1.-.-) cluster 0
DNA metabolism 0
DNA polymerase III epsilon cluster 0
DNA recombination 0
DNA repair 0
DNA replication 0
DNA uptake, competence 0
Detection 0
Detoxification 0
Di- and oligosaccharides 0
Electron accepting reactions 0
Electron donating reactions 0
Electron transport and photophosphorylation 0
Fatty acid metabolic cluster 0
Fatty acids 0
Fermentation 0
Flagella protein? 0
Flagellar motility in Prokaryota 0
Folate and pterines 0
Gene Transfer Agent (GTA) 0
Glutamine, glutamate, aspartate, asparagine; ammonia assimilation 0
Glycoside hydrolases 0
Gram-Negative cell wall components 0
Gram-Positive cell wall components 0
Heat shock 0
Histidine Metabolism 0
Hypothetical Related to Dihydroorate Dehydrogenase 0
Hypothetical associated with RecF 0
Hypothetical in Lysine biosynthetic cluster 0
Hypothetical lipase related to Phosphatidate metabolism 0
Hypothetical protein possible functionally linked with Alanyl-tRNA synthetase 0
Inorganic sulfur assimilation 0
Invasion and intracellular resistance 0
Isoprenoid/cell wall biosynthesis: PREDICTED UNDECAPRENYL DIPHOSPHATE PHOSPHATASE 0
Isoprenoids 0
Lipid-derived mediators 0
Lipoic acid 0
Lysine Biosynthesis 0
Lysine, threonine, methionine, and cysteine 0
Metabolism of central aromatic intermediates 0
Methylamine utilization 0
Molybdopterin oxidoreductase 0
Monosaccharides 0
NAD and NADP 0
Nucleotidyl-phosphate metabolic cluster 0
One-carbon Metabolism 0
Organic acids 0
Organic sulfur assimilation 0
Osmotic stress 0
Oxidative stress 0
Pathogenicity islands 0
Peripheral pathways for catabolism of aromatic compounds 0
Periplasmic Stress 0
Phages, Prophages 0
Phosphate metabolism 0
Phospholipids 0
Plant Alkaloids 0
Plant Hormones 0
Plant-Prokaryote DOE project 0
Plasmid related functions 0
Polysaccharides 0
Probably GTP or GMP signaling related 0
Probably Pyrimidine biosynthesis-related 0
Probably Ybbk-related hypothetical membrane proteins 0
Probably organic hydroperoxide resistance related hypothetical protein 0
Programmed Cell Death and Toxin-antitoxin Systems 0
Proline and 4-hydroxyproline 0
Proteasome related clusters 0
Protein and nucleoprotein secretion system, Type IV 0
Protein biosynthesis 0
Protein degradation 0
Protein export? 0
Protein folding 0
Protein processing and modification 0
Protein secretion system, Type I 0
Protein secretion system, Type II 0
Protein secretion system, Type III 0
Protein secretion system, Type V 0
Protein secretion system, Type VI 0
Protein secretion system, Type VII (Chaperone/Usher pathway, CU) 0
Protein secretion system, Type VIII (Extracellular nucleation/precipitation pathway, ENP) 0
Protein translocation across cytoplasmic membrane 0
Proteolytic pathway 0
Purines 0
Putative GGDEF domain protein related to agglutinin secretion 0
Putative Isoquinoline 1-oxidoreductase subunit 0
Putative asociate of RNA polymerase sigma-54 factor rpoN 0
Putrescine/GABA utilization cluster-temporal,to add to SSs 0
Pyridoxine 0
Pyrimidines 0
Pyruvate kinase associated cluster 0
Quinone cofactors 0
Quorum sensing and biofilm formation 0
RNA processing and modification 0
Recombination related cluster 0
Regulation of virulence 0
Related to Menaquinone-cytochrome C reductase 0
Resistance to antibiotics and toxic compounds 0
Reverse electron transport 0
Riboflavin, FMN, FAD 0
Ribosomal Protein L28P relates to a set of uncharacterized proteins 0
Ribosome-related cluster 0
Sarcosine oxidase 0
Selenoproteins 0
Shiga toxin cluster 0
Siderophores 0
Sodium Ion-Coupled Energetics 0
Spore DNA protection 0
Sugar Phosphotransferase Systems, PTS 0
Sugar alcohols 0
Sulfatases and sulfatase modifying factor 1 (and a hypothetical) 0
Tetrapyrroles 0
Three hypotheticals linked to lipoprotein biosynthesis 0
TldD cluster 0
Toxins and superantigens 0
Transcription 0
Translation 0
Transposable elements 0
Triacylglycerols 0
Tricarboxylate transporter 0
Two related proteases 0
Uni- Sym- and Antiporters 0
alpha-proteobacterial cluster of hypotheticals 0
proteosome related 0
recX and regulatory cluster 0
tRNA sulfuration 0
Archaea 9173
Bacteria 187264
Eukaryota 334
mgm4575347.3
ABC transporters 0
ATP synthases 0
Acid stress 0
Adhesion 0
Alanine, serine, and glycine 0
Aminosugars 0
Anaerobic degradation of aromatic compounds 0
Arginine; urea cycle, polyamines 0
Aromatic amino acids and derivatives 0
Bacterial cytostatics, differentiation factors and antibiotics 0
Bacteriocins, ribosomally synthesized antibacterial peptides 0
Biologically active compounds in metazoan cell defence and differentiation 0
Biosynthesis of galactoglycans and related lipopolysacharides 0
Biosynthesis of phenylpropanoids 0
Biotin 0
Branched-chain amino acids 0
CO2 fixation 0
CRISPRs and associated hypotheticals 0
CRISPs 0
Capsular and extracellular polysacchrides 0
Carbohydrates 0
Carotenoid biosynthesis 0
Cell Division 0
Cell wall of Mycobacteria 0
Central carbohydrate metabolism 0
Chemotaxis, response regulators 0
Choline bitartrate degradation, putative 0
Chromosome Replication 0
Clustering-based subsystems 0
Coenzyme A 0
Coenzyme B 0
Coenzyme F420 0
Coenzyme M 0
Cold shock 0
Cytochrome biogenesis 0
D-tyrosyl-tRNA(Tyr) deacylase (EC 3.1.-.-) cluster 0
DNA metabolism 0
DNA polymerase III epsilon cluster 0
DNA recombination 0
DNA repair 0
DNA replication 0
DNA uptake, competence 0
Detection 0
Detoxification 0
Di- and oligosaccharides 0
Electron accepting reactions 0
Electron donating reactions 0
Electron transport and photophosphorylation 0
Fatty acid metabolic cluster 0
Fatty acids 0
Fermentation 0
Flagella protein? 0
Flagellar motility in Prokaryota 0
Folate and pterines 0
Gene Transfer Agent (GTA) 0
Glutamine, glutamate, aspartate, asparagine; ammonia assimilation 0
Glycoside hydrolases 0
Gram-Negative cell wall components 0
Gram-Positive cell wall components 0
Heat shock 0
Histidine Metabolism 0
Hypothetical Related to Dihydroorate Dehydrogenase 0
Hypothetical associated with RecF 0
Hypothetical in Lysine biosynthetic cluster 0
Hypothetical lipase related to Phosphatidate metabolism 0
Hypothetical protein possible functionally linked with Alanyl-tRNA synthetase 0
Inorganic sulfur assimilation 0
Invasion and intracellular resistance 0
Isoprenoid/cell wall biosynthesis: PREDICTED UNDECAPRENYL DIPHOSPHATE PHOSPHATASE 0
Isoprenoids 0
Lipid-derived mediators 0
Lipoic acid 0
Lysine Biosynthesis 0
Lysine, threonine, methionine, and cysteine 0
Metabolism of central aromatic intermediates 0
Methylamine utilization 0
Molybdopterin oxidoreductase 0
Monosaccharides 0
NAD and NADP 0
Nucleotidyl-phosphate metabolic cluster 0
One-carbon Metabolism 0
Organic acids 0
Organic sulfur assimilation 0
Osmotic stress 0
Oxidative stress 0
Pathogenicity islands 0
Peripheral pathways for catabolism of aromatic compounds 0
Periplasmic Stress 0
Phages, Prophages 0
Phosphate metabolism 0
Phospholipids 0
Plant Alkaloids 0
Plant Hormones 0
Plant-Prokaryote DOE project 0
Plasmid related functions 0
Polysaccharides 0
Probably GTP or GMP signaling related 0
Probably Pyrimidine biosynthesis-related 0
Probably Ybbk-related hypothetical membrane proteins 0
Probably organic hydroperoxide resistance related hypothetical protein 0
Programmed Cell Death and Toxin-antitoxin Systems 0
Proline and 4-hydroxyproline 0
Proteasome related clusters 0
Protein and nucleoprotein secretion system, Type IV 0
Protein biosynthesis 0
Protein degradation 0
Protein export? 0
Protein folding 0
Protein processing and modification 0
Protein secretion system, Type I 0
Protein secretion system, Type II 0
Protein secretion system, Type III 0
Protein secretion system, Type V 0
Protein secretion system, Type VI 0
Protein secretion system, Type VII (Chaperone/Usher pathway, CU) 0
Protein secretion system, Type VIII (Extracellular nucleation/precipitation pathway, ENP) 0
Protein translocation across cytoplasmic membrane 0
Proteolytic pathway 0
Purines 0
Putative GGDEF domain protein related to agglutinin secretion 0
Putative Isoquinoline 1-oxidoreductase subunit 0
Putative asociate of RNA polymerase sigma-54 factor rpoN 0
Putrescine/GABA utilization cluster-temporal,to add to SSs 0
Pyridoxine 0
Pyrimidines 0
Pyruvate kinase associated cluster 0
Quinone cofactors 0
Quorum sensing and biofilm formation 0
RNA processing and modification 0
Recombination related cluster 0
Regulation of virulence 0
Related to Menaquinone-cytochrome C reductase 0
Resistance to antibiotics and toxic compounds 0
Reverse electron transport 0
Riboflavin, FMN, FAD 0
Ribosomal Protein L28P relates to a set of uncharacterized proteins 0
Ribosome-related cluster 0
Sarcosine oxidase 0
Selenoproteins 0
Shiga toxin cluster 0
Siderophores 0
Sodium Ion-Coupled Energetics 0
Spore DNA protection 0
Sugar Phosphotransferase Systems, PTS 0
Sugar alcohols 0
Sulfatases and sulfatase modifying factor 1 (and a hypothetical) 0
Tetrapyrroles 0
Three hypotheticals linked to lipoprotein biosynthesis 0
TldD cluster 0
Toxins and superantigens 0
Transcription 0
Translation 0
Transposable elements 0
Triacylglycerols 0
Tricarboxylate transporter 0
Two related proteases 0
Uni- Sym- and Antiporters 0
alpha-proteobacterial cluster of hypotheticals 0
proteosome related 0
recX and regulatory cluster 0
tRNA sulfuration 0
Archaea 2354
Bacteria 100992
Eukaryota 183
mgm4575348.3
ABC transporters 0
ATP synthases 0
Acid stress 0
Adhesion 0
Alanine, serine, and glycine 0
Aminosugars 0
Anaerobic degradation of aromatic compounds 0
Arginine; urea cycle, polyamines 0
Aromatic amino acids and derivatives 0
Bacterial cytostatics, differentiation factors and antibiotics 0
Bacteriocins, ribosomally synthesized antibacterial peptides 0
Biologically active compounds in metazoan cell defence and differentiation 0
Biosynthesis of galactoglycans and related lipopolysacharides 0
Biosynthesis of phenylpropanoids 0
Biotin 0
Branched-chain amino acids 0
CO2 fixation 0
CRISPRs and associated hypotheticals 0
CRISPs 0
Capsular and extracellular polysacchrides 0
Carbohydrates 0
Carotenoid biosynthesis 0
Cell Division 0
Cell wall of Mycobacteria 0
Central carbohydrate metabolism 0
Chemotaxis, response regulators 0
Choline bitartrate degradation, putative 0
Chromosome Replication 0
Clustering-based subsystems 0
Coenzyme A 0
Coenzyme B 0
Coenzyme F420 0
Coenzyme M 0
Cold shock 0
Cytochrome biogenesis 0
D-tyrosyl-tRNA(Tyr) deacylase (EC 3.1.-.-) cluster 0
DNA metabolism 0
DNA polymerase III epsilon cluster 0
DNA recombination 0
DNA repair 0
DNA replication 0
DNA uptake, competence 0
Detection 0
Detoxification 0
Di- and oligosaccharides 0
Electron accepting reactions 0
Electron donating reactions 0
Electron transport and photophosphorylation 0
Fatty acid metabolic cluster 0
Fatty acids 0
Fermentation 0
Flagella protein? 0
Flagellar motility in Prokaryota 0
Folate and pterines 0
Gene Transfer Agent (GTA) 0
Glutamine, glutamate, aspartate, asparagine; ammonia assimilation 0
Glycoside hydrolases 0
Gram-Negative cell wall components 0
Gram-Positive cell wall components 0
Heat shock 0
Histidine Metabolism 0
Hypothetical Related to Dihydroorate Dehydrogenase 0
Hypothetical associated with RecF 0
Hypothetical in Lysine biosynthetic cluster 0
Hypothetical lipase related to Phosphatidate metabolism 0
Hypothetical protein possible functionally linked with Alanyl-tRNA synthetase 0
Inorganic sulfur assimilation 0
Invasion and intracellular resistance 0
Isoprenoid/cell wall biosynthesis: PREDICTED UNDECAPRENYL DIPHOSPHATE PHOSPHATASE 0
Isoprenoids 0
Lipid-derived mediators 0
Lipoic acid 0
Lysine Biosynthesis 0
Lysine, threonine, methionine, and cysteine 0
Metabolism of central aromatic intermediates 0
Methylamine utilization 0
Molybdopterin oxidoreductase 0
Monosaccharides 0
NAD and NADP 0
Nucleotidyl-phosphate metabolic cluster 0
One-carbon Metabolism 0
Organic acids 0
Organic sulfur assimilation 0
Osmotic stress 0
Oxidative stress 0
Pathogenicity islands 0
Peripheral pathways for catabolism of aromatic compounds 0
Periplasmic Stress 0
Phages, Prophages 0
Phosphate metabolism 0
Phospholipids 0
Plant Alkaloids 0
Plant Hormones 0
Plant-Prokaryote DOE project 0
Plasmid related functions 0
Polysaccharides 0
Probably GTP or GMP signaling related 0
Probably Pyrimidine biosynthesis-related 0
Probably Ybbk-related hypothetical membrane proteins 0
Probably organic hydroperoxide resistance related hypothetical protein 0
Programmed Cell Death and Toxin-antitoxin Systems 0
Proline and 4-hydroxyproline 0
Proteasome related clusters 0
Protein and nucleoprotein secretion system, Type IV 0
Protein biosynthesis 0
Protein degradation 0
Protein export? 0
Protein folding 0
Protein processing and modification 0
Protein secretion system, Type I 0
Protein secretion system, Type II 0
Protein secretion system, Type III 0
Protein secretion system, Type V 0
Protein secretion system, Type VI 0
Protein secretion system, Type VII (Chaperone/Usher pathway, CU) 0
Protein secretion system, Type VIII (Extracellular nucleation/precipitation pathway, ENP) 0
Protein translocation across cytoplasmic membrane 0
Proteolytic pathway 0
Purines 0
Putative GGDEF domain protein related to agglutinin secretion 0
Putative Isoquinoline 1-oxidoreductase subunit 0
Putative asociate of RNA polymerase sigma-54 factor rpoN 0
Putrescine/GABA utilization cluster-temporal,to add to SSs 0
Pyridoxine 0
Pyrimidines 0
Pyruvate kinase associated cluster 0
Quinone cofactors 0
Quorum sensing and biofilm formation 0
RNA processing and modification 0
Recombination related cluster 0
Regulation of virulence 0
Related to Menaquinone-cytochrome C reductase 0
Resistance to antibiotics and toxic compounds 0
Reverse electron transport 0
Riboflavin, FMN, FAD 0
Ribosomal Protein L28P relates to a set of uncharacterized proteins 0
Ribosome-related cluster 0
Sarcosine oxidase 0
Selenoproteins 0
Shiga toxin cluster 0
Siderophores 0
Sodium Ion-Coupled Energetics 0
Spore DNA protection 0
Sugar Phosphotransferase Systems, PTS 0
Sugar alcohols 0
Sulfatases and sulfatase modifying factor 1 (and a hypothetical) 0
Tetrapyrroles 0
Three hypotheticals linked to lipoprotein biosynthesis 0
TldD cluster 0
Toxins and superantigens 0
Transcription 0
Translation 0
Transposable elements 0
Triacylglycerols 0
Tricarboxylate transporter 0
Two related proteases 0
Uni- Sym- and Antiporters 0
alpha-proteobacterial cluster of hypotheticals 0
proteosome related 0
recX and regulatory cluster 0
tRNA sulfuration 0
Archaea 15
Bacteria 55272
Eukaryota 5
[id:] derived with merge.biom(x = xx1, y = xx4)
[generated_by:] matR: metagenomics analysis tools for R (0.9.1) on [date:] 2019-12-11 22:28:51
[type:] sparse Function table (164x23 of which 984 nonzero)
[format:] Biological Observation Matrix 1.0
Warning message:
matR: merging different 'type's forces common 'type'
Warning message:
matR: merging with rows in common takes row metadata from 'x'
matR documentation built on May 2, 2019, 6:53 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Details Value Author(s) See Also Examples
Description
Merge two objects of class biom, maintaining metadata and other class structure.
Usage
1 2 |
Arguments
x |
an object ( |
y |
an object ( |
... |
unused |
Details
Complete technical documentation is forthcoming. For the current preliminary release, please refer to the examples provided.
Value
A biom object resulting from merging x and y.
Author(s)
Daniel T. Braithwaite
See Also
Examples
1 2 3 4 5 6 7 | #### merging requires only that all colnames be unique, so nonsense can be performed
merge (xx1, xx4)
#### a more likely example, based on applying different normalizations
aa <- transform (xx4 [,1:8], t_Threshold, t_Log)
bb <- transform (xx4 [,9:16], t_Threshold=list(entry.min=5), t_Log)
xx4_norm <- merge (aa, bb)
|
Example output
Loading required package: MGRASTer
MGRASTer (0.9 02e288)
Loading required package: BIOM.utils
BIOM.utils (0.9 dbcb27)
matR: metagenomics analysis tools for R (0.9.1)
mgm4440463.3
ABC transporters 10
ATP synthases 19
Acid stress 8
Adhesion 7
Alanine, serine, and glycine 42
Aminosugars 24
Anaerobic degradation of aromatic compounds 3
Arginine; urea cycle, polyamines 67
Aromatic amino acids and derivatives 37
Bacterial cytostatics, differentiation factors and antibiotics 0
Bacteriocins, ribosomally synthesized antibacterial peptides 2
Biologically active compounds in metazoan cell defence and differentiation 2
Biosynthesis of galactoglycans and related lipopolysacharides 44
Biosynthesis of phenylpropanoids 0
Biotin 26
Branched-chain amino acids 52
CO2 fixation 54
CRISPRs and associated hypotheticals 4
CRISPs 11
Capsular and extracellular polysacchrides 149
Carbohydrates 9
Carotenoid biosynthesis 4
Cell Division 30
Cell wall of Mycobacteria 22
Central carbohydrate metabolism 168
Chemotaxis, response regulators 0
Choline bitartrate degradation, putative 3
Chromosome Replication 3
Clustering-based subsystems 24
Coenzyme A 13
Coenzyme B 0
Coenzyme F420 0
Coenzyme M 0
Cold shock 0
Cytochrome biogenesis 16
D-tyrosyl-tRNA(Tyr) deacylase (EC 3.1.-.-) cluster 10
DNA metabolism 0
DNA polymerase III epsilon cluster 1
DNA recombination 12
DNA repair 149
DNA replication 177
DNA uptake, competence 22
Detection 18
Detoxification 12
Di- and oligosaccharides 130
Electron accepting reactions 17
Electron donating reactions 38
Electron transport and photophosphorylation 0
Fatty acid metabolic cluster 46
Fatty acids 60
Fermentation 41
Flagella protein? 0
Flagellar motility in Prokaryota 38
Folate and pterines 157
Gene Transfer Agent (GTA) 0
Glutamine, glutamate, aspartate, asparagine; ammonia assimilation 42
Glycoside hydrolases 8
Gram-Negative cell wall components 76
Gram-Positive cell wall components 18
Heat shock 34
Histidine Metabolism 6
Hypothetical Related to Dihydroorate Dehydrogenase 0
Hypothetical associated with RecF 8
Hypothetical in Lysine biosynthetic cluster 4
Hypothetical lipase related to Phosphatidate metabolism 3
Hypothetical protein possible functionally linked with Alanyl-tRNA synthetase 7
Inorganic sulfur assimilation 8
Invasion and intracellular resistance 5
Isoprenoid/cell wall biosynthesis: PREDICTED UNDECAPRENYL DIPHOSPHATE PHOSPHATASE 24
Isoprenoids 29
Lipid-derived mediators 0
Lipoic acid 0
Lysine Biosynthesis 0
Lysine, threonine, methionine, and cysteine 127
Metabolism of central aromatic intermediates 6
Methylamine utilization 11
Molybdopterin oxidoreductase 0
Monosaccharides 150
NAD and NADP 41
Nucleotidyl-phosphate metabolic cluster 16
One-carbon Metabolism 109
Organic acids 18
Organic sulfur assimilation 5
Osmotic stress 7
Oxidative stress 45
Pathogenicity islands 13
Peripheral pathways for catabolism of aromatic compounds 25
Periplasmic Stress 6
Phages, Prophages 161
Phosphate metabolism 8
Phospholipids 35
Plant Alkaloids 0
Plant Hormones 2
Plant-Prokaryote DOE project 412
Plasmid related functions 0
Polysaccharides 38
Probably GTP or GMP signaling related 16
Probably Pyrimidine biosynthesis-related 4
Probably Ybbk-related hypothetical membrane proteins 0
Probably organic hydroperoxide resistance related hypothetical protein 0
Programmed Cell Death and Toxin-antitoxin Systems 5
Proline and 4-hydroxyproline 18
Proteasome related clusters 0
Protein and nucleoprotein secretion system, Type IV 15
Protein biosynthesis 297
Protein degradation 71
Protein export? 15
Protein folding 36
Protein processing and modification 75
Protein secretion system, Type I 1
Protein secretion system, Type II 0
Protein secretion system, Type III 0
Protein secretion system, Type V 0
Protein secretion system, Type VI 7
Protein secretion system, Type VII (Chaperone/Usher pathway, CU) 0
Protein secretion system, Type VIII (Extracellular nucleation/precipitation pathway, ENP) 0
Protein translocation across cytoplasmic membrane 43
Proteolytic pathway 0
Purines 112
Putative GGDEF domain protein related to agglutinin secretion 0
Putative Isoquinoline 1-oxidoreductase subunit 0
Putative asociate of RNA polymerase sigma-54 factor rpoN 9
Putrescine/GABA utilization cluster-temporal,to add to SSs 0
Pyridoxine 24
Pyrimidines 92
Pyruvate kinase associated cluster 1
Quinone cofactors 9
Quorum sensing and biofilm formation 8
RNA processing and modification 183
Recombination related cluster 2
Regulation of virulence 40
Related to Menaquinone-cytochrome C reductase 0
Resistance to antibiotics and toxic compounds 117
Reverse electron transport 0
Riboflavin, FMN, FAD 15
Ribosomal Protein L28P relates to a set of uncharacterized proteins 21
Ribosome-related cluster 14
Sarcosine oxidase 0
Selenoproteins 14
Shiga toxin cluster 5
Siderophores 2
Sodium Ion-Coupled Energetics 12
Spore DNA protection 1
Sugar Phosphotransferase Systems, PTS 7
Sugar alcohols 28
Sulfatases and sulfatase modifying factor 1 (and a hypothetical) 2
Tetrapyrroles 31
Three hypotheticals linked to lipoprotein biosynthesis 6
TldD cluster 6
Toxins and superantigens 0
Transcription 66
Translation 20
Transposable elements 67
Triacylglycerols 6
Tricarboxylate transporter 0
Two related proteases 10
Uni- Sym- and Antiporters 8
alpha-proteobacterial cluster of hypotheticals 0
proteosome related 7
recX and regulatory cluster 1
tRNA sulfuration 2
Archaea 0
Bacteria 0
Eukaryota 0
mgm4440464.3
ABC transporters 15
ATP synthases 13
Acid stress 1
Adhesion 5
Alanine, serine, and glycine 43
Aminosugars 18
Anaerobic degradation of aromatic compounds 5
Arginine; urea cycle, polyamines 45
Aromatic amino acids and derivatives 23
Bacterial cytostatics, differentiation factors and antibiotics 0
Bacteriocins, ribosomally synthesized antibacterial peptides 1
Biologically active compounds in metazoan cell defence and differentiation 2
Biosynthesis of galactoglycans and related lipopolysacharides 58
Biosynthesis of phenylpropanoids 0
Biotin 14
Branched-chain amino acids 39
CO2 fixation 34
CRISPRs and associated hypotheticals 4
CRISPs 15
Capsular and extracellular polysacchrides 199
Carbohydrates 10
Carotenoid biosynthesis 0
Cell Division 27
Cell wall of Mycobacteria 18
Central carbohydrate metabolism 118
Chemotaxis, response regulators 0
Choline bitartrate degradation, putative 1
Chromosome Replication 2
Clustering-based subsystems 20
Coenzyme A 12
Coenzyme B 0
Coenzyme F420 0
Coenzyme M 0
Cold shock 0
Cytochrome biogenesis 15
D-tyrosyl-tRNA(Tyr) deacylase (EC 3.1.-.-) cluster 1
DNA metabolism 0
DNA polymerase III epsilon cluster 0
DNA recombination 5
DNA repair 130
DNA replication 158
DNA uptake, competence 26
Detection 10
Detoxification 13
Di- and oligosaccharides 130
Electron accepting reactions 18
Electron donating reactions 21
Electron transport and photophosphorylation 0
Fatty acid metabolic cluster 30
Fatty acids 41
Fermentation 27
Flagella protein? 0
Flagellar motility in Prokaryota 68
Folate and pterines 119
Gene Transfer Agent (GTA) 0
Glutamine, glutamate, aspartate, asparagine; ammonia assimilation 41
Glycoside hydrolases 3
Gram-Negative cell wall components 56
Gram-Positive cell wall components 35
Heat shock 28
Histidine Metabolism 24
Hypothetical Related to Dihydroorate Dehydrogenase 0
Hypothetical associated with RecF 5
Hypothetical in Lysine biosynthetic cluster 9
Hypothetical lipase related to Phosphatidate metabolism 2
Hypothetical protein possible functionally linked with Alanyl-tRNA synthetase 6
Inorganic sulfur assimilation 16
Invasion and intracellular resistance 5
Isoprenoid/cell wall biosynthesis: PREDICTED UNDECAPRENYL DIPHOSPHATE PHOSPHATASE 16
Isoprenoids 24
Lipid-derived mediators 0
Lipoic acid 3
Lysine Biosynthesis 0
Lysine, threonine, methionine, and cysteine 95
Metabolism of central aromatic intermediates 4
Methylamine utilization 12
Molybdopterin oxidoreductase 1
Monosaccharides 94
NAD and NADP 27
Nucleotidyl-phosphate metabolic cluster 17
One-carbon Metabolism 73
Organic acids 11
Organic sulfur assimilation 2
Osmotic stress 1
Oxidative stress 32
Pathogenicity islands 16
Peripheral pathways for catabolism of aromatic compounds 17
Periplasmic Stress 4
Phages, Prophages 162
Phosphate metabolism 4
Phospholipids 28
Plant Alkaloids 0
Plant Hormones 6
Plant-Prokaryote DOE project 318
Plasmid related functions 0
Polysaccharides 21
Probably GTP or GMP signaling related 13
Probably Pyrimidine biosynthesis-related 1
Probably Ybbk-related hypothetical membrane proteins 2
Probably organic hydroperoxide resistance related hypothetical protein 0
Programmed Cell Death and Toxin-antitoxin Systems 8
Proline and 4-hydroxyproline 7
Proteasome related clusters 0
Protein and nucleoprotein secretion system, Type IV 10
Protein biosynthesis 225
Protein degradation 35
Protein export? 22
Protein folding 29
Protein processing and modification 81
Protein secretion system, Type I 0
Protein secretion system, Type II 10
Protein secretion system, Type III 0
Protein secretion system, Type V 0
Protein secretion system, Type VI 11
Protein secretion system, Type VII (Chaperone/Usher pathway, CU) 0
Protein secretion system, Type VIII (Extracellular nucleation/precipitation pathway, ENP) 0
Protein translocation across cytoplasmic membrane 33
Proteolytic pathway 0
Purines 49
Putative GGDEF domain protein related to agglutinin secretion 0
Putative Isoquinoline 1-oxidoreductase subunit 0
Putative asociate of RNA polymerase sigma-54 factor rpoN 3
Putrescine/GABA utilization cluster-temporal,to add to SSs 0
Pyridoxine 17
Pyrimidines 41
Pyruvate kinase associated cluster 5
Quinone cofactors 3
Quorum sensing and biofilm formation 7
RNA processing and modification 151
Recombination related cluster 5
Regulation of virulence 15
Related to Menaquinone-cytochrome C reductase 0
Resistance to antibiotics and toxic compounds 95
Reverse electron transport 0
Riboflavin, FMN, FAD 6
Ribosomal Protein L28P relates to a set of uncharacterized proteins 16
Ribosome-related cluster 8
Sarcosine oxidase 0
Selenoproteins 11
Shiga toxin cluster 2
Siderophores 1
Sodium Ion-Coupled Energetics 3
Spore DNA protection 3
Sugar Phosphotransferase Systems, PTS 14
Sugar alcohols 28
Sulfatases and sulfatase modifying factor 1 (and a hypothetical) 1
Tetrapyrroles 39
Three hypotheticals linked to lipoprotein biosynthesis 0
TldD cluster 8
Toxins and superantigens 1
Transcription 56
Translation 13
Transposable elements 28
Triacylglycerols 0
Tricarboxylate transporter 5
Two related proteases 5
Uni- Sym- and Antiporters 5
alpha-proteobacterial cluster of hypotheticals 0
proteosome related 2
recX and regulatory cluster 0
tRNA sulfuration 4
Archaea 0
Bacteria 0
Eukaryota 0
mgm4441679.3
ABC transporters 196
ATP synthases 194
Acid stress 20
Adhesion 22
Alanine, serine, and glycine 452
Aminosugars 84
Anaerobic degradation of aromatic compounds 37
Arginine; urea cycle, polyamines 475
Aromatic amino acids and derivatives 324
Bacterial cytostatics, differentiation factors and antibiotics 0
Bacteriocins, ribosomally synthesized antibacterial peptides 6
Biologically active compounds in metazoan cell defence and differentiation 14
Biosynthesis of galactoglycans and related lipopolysacharides 81
Biosynthesis of phenylpropanoids 4
Biotin 140
Branched-chain amino acids 313
CO2 fixation 430
CRISPRs and associated hypotheticals 2
CRISPs 3
Capsular and extracellular polysacchrides 658
Carbohydrates 71
Carotenoid biosynthesis 0
Cell Division 244
Cell wall of Mycobacteria 40
Central carbohydrate metabolism 1475
Chemotaxis, response regulators 0
Choline bitartrate degradation, putative 22
Chromosome Replication 30
Clustering-based subsystems 226
Coenzyme A 51
Coenzyme B 1
Coenzyme F420 1
Coenzyme M 1
Cold shock 0
Cytochrome biogenesis 65
D-tyrosyl-tRNA(Tyr) deacylase (EC 3.1.-.-) cluster 9
DNA metabolism 2
DNA polymerase III epsilon cluster 17
DNA recombination 61
DNA repair 830
DNA replication 1086
DNA uptake, competence 102
Detection 159
Detoxification 58
Di- and oligosaccharides 806
Electron accepting reactions 83
Electron donating reactions 286
Electron transport and photophosphorylation 0
Fatty acid metabolic cluster 192
Fatty acids 280
Fermentation 337
Flagella protein? 0
Flagellar motility in Prokaryota 121
Folate and pterines 1091
Gene Transfer Agent (GTA) 0
Glutamine, glutamate, aspartate, asparagine; ammonia assimilation 548
Glycoside hydrolases 24
Gram-Negative cell wall components 213
Gram-Positive cell wall components 90
Heat shock 323
Histidine Metabolism 169
Hypothetical Related to Dihydroorate Dehydrogenase 1
Hypothetical associated with RecF 18
Hypothetical in Lysine biosynthetic cluster 31
Hypothetical lipase related to Phosphatidate metabolism 0
Hypothetical protein possible functionally linked with Alanyl-tRNA synthetase 62
Inorganic sulfur assimilation 61
Invasion and intracellular resistance 10
Isoprenoid/cell wall biosynthesis: PREDICTED UNDECAPRENYL DIPHOSPHATE PHOSPHATASE 72
Isoprenoids 185
Lipid-derived mediators 0
Lipoic acid 0
Lysine Biosynthesis 1
Lysine, threonine, methionine, and cysteine 1128
Metabolism of central aromatic intermediates 46
Methylamine utilization 151
Molybdopterin oxidoreductase 0
Monosaccharides 1006
NAD and NADP 134
Nucleotidyl-phosphate metabolic cluster 78
One-carbon Metabolism 630
Organic acids 188
Organic sulfur assimilation 25
Osmotic stress 54
Oxidative stress 288
Pathogenicity islands 192
Peripheral pathways for catabolism of aromatic compounds 176
Periplasmic Stress 8
Phages, Prophages 395
Phosphate metabolism 12
Phospholipids 166
Plant Alkaloids 0
Plant Hormones 49
Plant-Prokaryote DOE project 2662
Plasmid related functions 0
Polysaccharides 246
Probably GTP or GMP signaling related 110
Probably Pyrimidine biosynthesis-related 30
Probably Ybbk-related hypothetical membrane proteins 14
Probably organic hydroperoxide resistance related hypothetical protein 13
Programmed Cell Death and Toxin-antitoxin Systems 26
Proline and 4-hydroxyproline 134
Proteasome related clusters 0
Protein and nucleoprotein secretion system, Type IV 85
Protein biosynthesis 3501
Protein degradation 436
Protein export? 181
Protein folding 417
Protein processing and modification 378
Protein secretion system, Type I 0
Protein secretion system, Type II 21
Protein secretion system, Type III 11
Protein secretion system, Type V 0
Protein secretion system, Type VI 107
Protein secretion system, Type VII (Chaperone/Usher pathway, CU) 0
Protein secretion system, Type VIII (Extracellular nucleation/precipitation pathway, ENP) 0
Protein translocation across cytoplasmic membrane 255
Proteolytic pathway 0
Purines 710
Putative GGDEF domain protein related to agglutinin secretion 0
Putative Isoquinoline 1-oxidoreductase subunit 0
Putative asociate of RNA polymerase sigma-54 factor rpoN 0
Putrescine/GABA utilization cluster-temporal,to add to SSs 10
Pyridoxine 183
Pyrimidines 518
Pyruvate kinase associated cluster 0
Quinone cofactors 25
Quorum sensing and biofilm formation 97
RNA processing and modification 1196
Recombination related cluster 30
Regulation of virulence 150
Related to Menaquinone-cytochrome C reductase 0
Resistance to antibiotics and toxic compounds 538
Reverse electron transport 2
Riboflavin, FMN, FAD 22
Ribosomal Protein L28P relates to a set of uncharacterized proteins 26
Ribosome-related cluster 98
Sarcosine oxidase 8
Selenoproteins 71
Shiga toxin cluster 20
Siderophores 2
Sodium Ion-Coupled Energetics 75
Spore DNA protection 0
Sugar Phosphotransferase Systems, PTS 27
Sugar alcohols 203
Sulfatases and sulfatase modifying factor 1 (and a hypothetical) 8
Tetrapyrroles 181
Three hypotheticals linked to lipoprotein biosynthesis 10
TldD cluster 20
Toxins and superantigens 0
Transcription 577
Translation 152
Transposable elements 40
Triacylglycerols 0
Tricarboxylate transporter 24
Two related proteases 114
Uni- Sym- and Antiporters 19
alpha-proteobacterial cluster of hypotheticals 0
proteosome related 9
recX and regulatory cluster 17
tRNA sulfuration 14
Archaea 0
Bacteria 0
Eukaryota 0
mgm4441680.3
ABC transporters 175
ATP synthases 145
Acid stress 21
Adhesion 8
Alanine, serine, and glycine 241
Aminosugars 116
Anaerobic degradation of aromatic compounds 48
Arginine; urea cycle, polyamines 288
Aromatic amino acids and derivatives 284
Bacterial cytostatics, differentiation factors and antibiotics 0
Bacteriocins, ribosomally synthesized antibacterial peptides 2
Biologically active compounds in metazoan cell defence and differentiation 6
Biosynthesis of galactoglycans and related lipopolysacharides 69
Biosynthesis of phenylpropanoids 0
Biotin 102
Branched-chain amino acids 228
CO2 fixation 314
CRISPRs and associated hypotheticals 2
CRISPs 6
Capsular and extracellular polysacchrides 595
Carbohydrates 36
Carotenoid biosynthesis 0
Cell Division 127
Cell wall of Mycobacteria 47
Central carbohydrate metabolism 1114
Chemotaxis, response regulators 0
Choline bitartrate degradation, putative 8
Chromosome Replication 20
Clustering-based subsystems 136
Coenzyme A 29
Coenzyme B 0
Coenzyme F420 0
Coenzyme M 0
Cold shock 0
Cytochrome biogenesis 71
D-tyrosyl-tRNA(Tyr) deacylase (EC 3.1.-.-) cluster 0
DNA metabolism 1
DNA polymerase III epsilon cluster 26
DNA recombination 50
DNA repair 648
DNA replication 734
DNA uptake, competence 42
Detection 101
Detoxification 29
Di- and oligosaccharides 645
Electron accepting reactions 49
Electron donating reactions 245
Electron transport and photophosphorylation 1
Fatty acid metabolic cluster 119
Fatty acids 202
Fermentation 209
Flagella protein? 0
Flagellar motility in Prokaryota 60
Folate and pterines 695
Gene Transfer Agent (GTA) 0
Glutamine, glutamate, aspartate, asparagine; ammonia assimilation 378
Glycoside hydrolases 21
Gram-Negative cell wall components 171
Gram-Positive cell wall components 50
Heat shock 194
Histidine Metabolism 124
Hypothetical Related to Dihydroorate Dehydrogenase 2
Hypothetical associated with RecF 0
Hypothetical in Lysine biosynthetic cluster 25
Hypothetical lipase related to Phosphatidate metabolism 12
Hypothetical protein possible functionally linked with Alanyl-tRNA synthetase 52
Inorganic sulfur assimilation 42
Invasion and intracellular resistance 10
Isoprenoid/cell wall biosynthesis: PREDICTED UNDECAPRENYL DIPHOSPHATE PHOSPHATASE 63
Isoprenoids 127
Lipid-derived mediators 3
Lipoic acid 3
Lysine Biosynthesis 2
Lysine, threonine, methionine, and cysteine 811
Metabolism of central aromatic intermediates 26
Methylamine utilization 89
Molybdopterin oxidoreductase 0
Monosaccharides 828
NAD and NADP 141
Nucleotidyl-phosphate metabolic cluster 55
One-carbon Metabolism 514
Organic acids 126
Organic sulfur assimilation 18
Osmotic stress 17
Oxidative stress 176
Pathogenicity islands 133
Peripheral pathways for catabolism of aromatic compounds 126
Periplasmic Stress 16
Phages, Prophages 245
Phosphate metabolism 7
Phospholipids 176
Plant Alkaloids 0
Plant Hormones 26
Plant-Prokaryote DOE project 1792
Plasmid related functions 0
Polysaccharides 258
Probably GTP or GMP signaling related 55
Probably Pyrimidine biosynthesis-related 17
Probably Ybbk-related hypothetical membrane proteins 1
Probably organic hydroperoxide resistance related hypothetical protein 9
Programmed Cell Death and Toxin-antitoxin Systems 10
Proline and 4-hydroxyproline 68
Proteasome related clusters 1
Protein and nucleoprotein secretion system, Type IV 55
Protein biosynthesis 2463
Protein degradation 351
Protein export? 145
Protein folding 321
Protein processing and modification 261
Protein secretion system, Type I 0
Protein secretion system, Type II 20
Protein secretion system, Type III 9
Protein secretion system, Type V 3
Protein secretion system, Type VI 91
Protein secretion system, Type VII (Chaperone/Usher pathway, CU) 0
Protein secretion system, Type VIII (Extracellular nucleation/precipitation pathway, ENP) 0
Protein translocation across cytoplasmic membrane 196
Proteolytic pathway 1
Purines 483
Putative GGDEF domain protein related to agglutinin secretion 0
Putative Isoquinoline 1-oxidoreductase subunit 0
Putative asociate of RNA polymerase sigma-54 factor rpoN 1
Putrescine/GABA utilization cluster-temporal,to add to SSs 5
Pyridoxine 90
Pyrimidines 380
Pyruvate kinase associated cluster 0
Quinone cofactors 9
Quorum sensing and biofilm formation 59
RNA processing and modification 657
Recombination related cluster 30
Regulation of virulence 63
Related to Menaquinone-cytochrome C reductase 0
Resistance to antibiotics and toxic compounds 432
Reverse electron transport 5
Riboflavin, FMN, FAD 40
Ribosomal Protein L28P relates to a set of uncharacterized proteins 48
Ribosome-related cluster 77
Sarcosine oxidase 4
Selenoproteins 28
Shiga toxin cluster 18
Siderophores 0
Sodium Ion-Coupled Energetics 62
Spore DNA protection 0
Sugar Phosphotransferase Systems, PTS 9
Sugar alcohols 120
Sulfatases and sulfatase modifying factor 1 (and a hypothetical) 7
Tetrapyrroles 133
Three hypotheticals linked to lipoprotein biosynthesis 0
TldD cluster 21
Toxins and superantigens 0
Transcription 467
Translation 78
Transposable elements 61
Triacylglycerols 4
Tricarboxylate transporter 19
Two related proteases 83
Uni- Sym- and Antiporters 11
alpha-proteobacterial cluster of hypotheticals 0
proteosome related 0
recX and regulatory cluster 11
tRNA sulfuration 14
Archaea 0
Bacteria 0
Eukaryota 0
mgm4441682.3
ABC transporters 222
ATP synthases 210
Acid stress 9
Adhesion 19
Alanine, serine, and glycine 346
Aminosugars 122
Anaerobic degradation of aromatic compounds 24
Arginine; urea cycle, polyamines 428
Aromatic amino acids and derivatives 451
Bacterial cytostatics, differentiation factors and antibiotics 0
Bacteriocins, ribosomally synthesized antibacterial peptides 1
Biologically active compounds in metazoan cell defence and differentiation 0
Biosynthesis of galactoglycans and related lipopolysacharides 118
Biosynthesis of phenylpropanoids 0
Biotin 101
Branched-chain amino acids 333
CO2 fixation 379
CRISPRs and associated hypotheticals 4
CRISPs 8
Capsular and extracellular polysacchrides 738
Carbohydrates 45
Carotenoid biosynthesis 0
Cell Division 212
Cell wall of Mycobacteria 58
Central carbohydrate metabolism 1351
Chemotaxis, response regulators 0
Choline bitartrate degradation, putative 13
Chromosome Replication 18
Clustering-based subsystems 180
Coenzyme A 10
Coenzyme B 6
Coenzyme F420 9
Coenzyme M 2
Cold shock 3
Cytochrome biogenesis 73
D-tyrosyl-tRNA(Tyr) deacylase (EC 3.1.-.-) cluster 0
DNA metabolism 0
DNA polymerase III epsilon cluster 13
DNA recombination 78
DNA repair 802
DNA replication 1120
DNA uptake, competence 94
Detection 127
Detoxification 17
Di- and oligosaccharides 835
Electron accepting reactions 62
Electron donating reactions 356
Electron transport and photophosphorylation 0
Fatty acid metabolic cluster 175
Fatty acids 232
Fermentation 297
Flagella protein? 0
Flagellar motility in Prokaryota 84
Folate and pterines 902
Gene Transfer Agent (GTA) 2
Glutamine, glutamate, aspartate, asparagine; ammonia assimilation 460
Glycoside hydrolases 21
Gram-Negative cell wall components 219
Gram-Positive cell wall components 77
Heat shock 299
Histidine Metabolism 183
Hypothetical Related to Dihydroorate Dehydrogenase 0
Hypothetical associated with RecF 0
Hypothetical in Lysine biosynthetic cluster 38
Hypothetical lipase related to Phosphatidate metabolism 15
Hypothetical protein possible functionally linked with Alanyl-tRNA synthetase 73
Inorganic sulfur assimilation 49
Invasion and intracellular resistance 6
Isoprenoid/cell wall biosynthesis: PREDICTED UNDECAPRENYL DIPHOSPHATE PHOSPHATASE 96
Isoprenoids 170
Lipid-derived mediators 0
Lipoic acid 0
Lysine Biosynthesis 3
Lysine, threonine, methionine, and cysteine 1041
Metabolism of central aromatic intermediates 22
Methylamine utilization 118
Molybdopterin oxidoreductase 0
Monosaccharides 980
NAD and NADP 59
Nucleotidyl-phosphate metabolic cluster 72
One-carbon Metabolism 619
Organic acids 163
Organic sulfur assimilation 17
Osmotic stress 33
Oxidative stress 177
Pathogenicity islands 166
Peripheral pathways for catabolism of aromatic compounds 136
Periplasmic Stress 23
Phages, Prophages 463
Phosphate metabolism 17
Phospholipids 147
Plant Alkaloids 2
Plant Hormones 63
Plant-Prokaryote DOE project 2269
Plasmid related functions 0
Polysaccharides 295
Probably GTP or GMP signaling related 104
Probably Pyrimidine biosynthesis-related 29
Probably Ybbk-related hypothetical membrane proteins 18
Probably organic hydroperoxide resistance related hypothetical protein 6
Programmed Cell Death and Toxin-antitoxin Systems 9
Proline and 4-hydroxyproline 122
Proteasome related clusters 3
Protein and nucleoprotein secretion system, Type IV 78
Protein biosynthesis 3175
Protein degradation 427
Protein export? 168
Protein folding 391
Protein processing and modification 294
Protein secretion system, Type I 0
Protein secretion system, Type II 30
Protein secretion system, Type III 1
Protein secretion system, Type V 3
Protein secretion system, Type VI 107
Protein secretion system, Type VII (Chaperone/Usher pathway, CU) 0
Protein secretion system, Type VIII (Extracellular nucleation/precipitation pathway, ENP) 2
Protein translocation across cytoplasmic membrane 249
Proteolytic pathway 0
Purines 719
Putative GGDEF domain protein related to agglutinin secretion 0
Putative Isoquinoline 1-oxidoreductase subunit 0
Putative asociate of RNA polymerase sigma-54 factor rpoN 0
Putrescine/GABA utilization cluster-temporal,to add to SSs 2
Pyridoxine 124
Pyrimidines 565
Pyruvate kinase associated cluster 0
Quinone cofactors 20
Quorum sensing and biofilm formation 75
RNA processing and modification 859
Recombination related cluster 41
Regulation of virulence 81
Related to Menaquinone-cytochrome C reductase 0
Resistance to antibiotics and toxic compounds 468
Reverse electron transport 24
Riboflavin, FMN, FAD 14
Ribosomal Protein L28P relates to a set of uncharacterized proteins 47
Ribosome-related cluster 79
Sarcosine oxidase 16
Selenoproteins 65
Shiga toxin cluster 26
Siderophores 4
Sodium Ion-Coupled Energetics 64
Spore DNA protection 0
Sugar Phosphotransferase Systems, PTS 25
Sugar alcohols 233
Sulfatases and sulfatase modifying factor 1 (and a hypothetical) 3
Tetrapyrroles 248
Three hypotheticals linked to lipoprotein biosynthesis 11
TldD cluster 1
Toxins and superantigens 0
Transcription 649
Translation 137
Transposable elements 25
Triacylglycerols 0
Tricarboxylate transporter 26
Two related proteases 99
Uni- Sym- and Antiporters 18
alpha-proteobacterial cluster of hypotheticals 0
proteosome related 5
recX and regulatory cluster 10
tRNA sulfuration 18
Archaea 0
Bacteria 0
Eukaryota 0
mgm4441695.3
ABC transporters 208
ATP synthases 22
Acid stress 9
Adhesion 17
Alanine, serine, and glycine 119
Aminosugars 9
Anaerobic degradation of aromatic compounds 33
Arginine; urea cycle, polyamines 289
Aromatic amino acids and derivatives 106
Bacterial cytostatics, differentiation factors and antibiotics 4
Bacteriocins, ribosomally synthesized antibacterial peptides 2
Biologically active compounds in metazoan cell defence and differentiation 9
Biosynthesis of galactoglycans and related lipopolysacharides 37
Biosynthesis of phenylpropanoids 5
Biotin 65
Branched-chain amino acids 309
CO2 fixation 158
CRISPRs and associated hypotheticals 0
CRISPs 0
Capsular and extracellular polysacchrides 177
Carbohydrates 31
Carotenoid biosynthesis 0
Cell Division 59
Cell wall of Mycobacteria 45
Central carbohydrate metabolism 771
Chemotaxis, response regulators 2
Choline bitartrate degradation, putative 12
Chromosome Replication 3
Clustering-based subsystems 120
Coenzyme A 19
Coenzyme B 0
Coenzyme F420 0
Coenzyme M 1
Cold shock 4
Cytochrome biogenesis 29
D-tyrosyl-tRNA(Tyr) deacylase (EC 3.1.-.-) cluster 1
DNA metabolism 0
DNA polymerase III epsilon cluster 19
DNA recombination 22
DNA repair 273
DNA replication 202
DNA uptake, competence 19
Detection 42
Detoxification 54
Di- and oligosaccharides 198
Electron accepting reactions 196
Electron donating reactions 188
Electron transport and photophosphorylation 0
Fatty acid metabolic cluster 139
Fatty acids 199
Fermentation 182
Flagella protein? 5
Flagellar motility in Prokaryota 215
Folate and pterines 479
Gene Transfer Agent (GTA) 0
Glutamine, glutamate, aspartate, asparagine; ammonia assimilation 136
Glycoside hydrolases 3
Gram-Negative cell wall components 245
Gram-Positive cell wall components 9
Heat shock 70
Histidine Metabolism 68
Hypothetical Related to Dihydroorate Dehydrogenase 2
Hypothetical associated with RecF 2
Hypothetical in Lysine biosynthetic cluster 21
Hypothetical lipase related to Phosphatidate metabolism 13
Hypothetical protein possible functionally linked with Alanyl-tRNA synthetase 15
Inorganic sulfur assimilation 29
Invasion and intracellular resistance 0
Isoprenoid/cell wall biosynthesis: PREDICTED UNDECAPRENYL DIPHOSPHATE PHOSPHATASE 28
Isoprenoids 52
Lipid-derived mediators 3
Lipoic acid 10
Lysine Biosynthesis 6
Lysine, threonine, methionine, and cysteine 491
Metabolism of central aromatic intermediates 126
Methylamine utilization 39
Molybdopterin oxidoreductase 0
Monosaccharides 483
NAD and NADP 65
Nucleotidyl-phosphate metabolic cluster 57
One-carbon Metabolism 414
Organic acids 245
Organic sulfur assimilation 142
Osmotic stress 53
Oxidative stress 239
Pathogenicity islands 28
Peripheral pathways for catabolism of aromatic compounds 150
Periplasmic Stress 21
Phages, Prophages 188
Phosphate metabolism 24
Phospholipids 122
Plant Alkaloids 0
Plant Hormones 17
Plant-Prokaryote DOE project 1194
Plasmid related functions 5
Polysaccharides 34
Probably GTP or GMP signaling related 39
Probably Pyrimidine biosynthesis-related 10
Probably Ybbk-related hypothetical membrane proteins 1
Probably organic hydroperoxide resistance related hypothetical protein 4
Programmed Cell Death and Toxin-antitoxin Systems 6
Proline and 4-hydroxyproline 55
Proteasome related clusters 0
Protein and nucleoprotein secretion system, Type IV 131
Protein biosynthesis 517
Protein degradation 172
Protein export? 25
Protein folding 111
Protein processing and modification 145
Protein secretion system, Type I 1
Protein secretion system, Type II 30
Protein secretion system, Type III 0
Protein secretion system, Type V 2
Protein secretion system, Type VI 118
Protein secretion system, Type VII (Chaperone/Usher pathway, CU) 14
Protein secretion system, Type VIII (Extracellular nucleation/precipitation pathway, ENP) 0
Protein translocation across cytoplasmic membrane 45
Proteolytic pathway 0
Purines 311
Putative GGDEF domain protein related to agglutinin secretion 0
Putative Isoquinoline 1-oxidoreductase subunit 37
Putative asociate of RNA polymerase sigma-54 factor rpoN 36
Putrescine/GABA utilization cluster-temporal,to add to SSs 42
Pyridoxine 39
Pyrimidines 146
Pyruvate kinase associated cluster 25
Quinone cofactors 90
Quorum sensing and biofilm formation 3
RNA processing and modification 444
Recombination related cluster 1
Regulation of virulence 45
Related to Menaquinone-cytochrome C reductase 1
Resistance to antibiotics and toxic compounds 696
Reverse electron transport 0
Riboflavin, FMN, FAD 58
Ribosomal Protein L28P relates to a set of uncharacterized proteins 23
Ribosome-related cluster 19
Sarcosine oxidase 7
Selenoproteins 64
Shiga toxin cluster 8
Siderophores 13
Sodium Ion-Coupled Energetics 0
Spore DNA protection 0
Sugar Phosphotransferase Systems, PTS 18
Sugar alcohols 140
Sulfatases and sulfatase modifying factor 1 (and a hypothetical) 9
Tetrapyrroles 84
Three hypotheticals linked to lipoprotein biosynthesis 9
TldD cluster 20
Toxins and superantigens 0
Transcription 193
Translation 40
Transposable elements 34
Triacylglycerols 11
Tricarboxylate transporter 11
Two related proteases 14
Uni- Sym- and Antiporters 3
alpha-proteobacterial cluster of hypotheticals 0
proteosome related 4
recX and regulatory cluster 0
tRNA sulfuration 6
Archaea 0
Bacteria 0
Eukaryota 0
mgm4441696.3
ABC transporters 285
ATP synthases 15
Acid stress 8
Adhesion 7
Alanine, serine, and glycine 136
Aminosugars 31
Anaerobic degradation of aromatic compounds 50
Arginine; urea cycle, polyamines 256
Aromatic amino acids and derivatives 125
Bacterial cytostatics, differentiation factors and antibiotics 2
Bacteriocins, ribosomally synthesized antibacterial peptides 11
Biologically active compounds in metazoan cell defence and differentiation 7
Biosynthesis of galactoglycans and related lipopolysacharides 58
Biosynthesis of phenylpropanoids 1
Biotin 101
Branched-chain amino acids 219
CO2 fixation 227
CRISPRs and associated hypotheticals 1
CRISPs 0
Capsular and extracellular polysacchrides 195
Carbohydrates 10
Carotenoid biosynthesis 3
Cell Division 20
Cell wall of Mycobacteria 44
Central carbohydrate metabolism 628
Chemotaxis, response regulators 0
Choline bitartrate degradation, putative 16
Chromosome Replication 9
Clustering-based subsystems 120
Coenzyme A 32
Coenzyme B 0
Coenzyme F420 0
Coenzyme M 2
Cold shock 2
Cytochrome biogenesis 46
D-tyrosyl-tRNA(Tyr) deacylase (EC 3.1.-.-) cluster 16
DNA metabolism 0
DNA polymerase III epsilon cluster 15
DNA recombination 19
DNA repair 270
DNA replication 296
DNA uptake, competence 24
Detection 36
Detoxification 79
Di- and oligosaccharides 322
Electron accepting reactions 162
Electron donating reactions 203
Electron transport and photophosphorylation 0
Fatty acid metabolic cluster 71
Fatty acids 164
Fermentation 142
Flagella protein? 6
Flagellar motility in Prokaryota 209
Folate and pterines 456
Gene Transfer Agent (GTA) 0
Glutamine, glutamate, aspartate, asparagine; ammonia assimilation 149
Glycoside hydrolases 15
Gram-Negative cell wall components 268
Gram-Positive cell wall components 8
Heat shock 47
Histidine Metabolism 84
Hypothetical Related to Dihydroorate Dehydrogenase 10
Hypothetical associated with RecF 0
Hypothetical in Lysine biosynthetic cluster 12
Hypothetical lipase related to Phosphatidate metabolism 10
Hypothetical protein possible functionally linked with Alanyl-tRNA synthetase 10
Inorganic sulfur assimilation 97
Invasion and intracellular resistance 0
Isoprenoid/cell wall biosynthesis: PREDICTED UNDECAPRENYL DIPHOSPHATE PHOSPHATASE 40
Isoprenoids 62
Lipid-derived mediators 0
Lipoic acid 19
Lysine Biosynthesis 0
Lysine, threonine, methionine, and cysteine 455
Metabolism of central aromatic intermediates 147
Methylamine utilization 23
Molybdopterin oxidoreductase 0
Monosaccharides 497
NAD and NADP 91
Nucleotidyl-phosphate metabolic cluster 13
One-carbon Metabolism 316
Organic acids 234
Organic sulfur assimilation 221
Osmotic stress 103
Oxidative stress 245
Pathogenicity islands 52
Peripheral pathways for catabolism of aromatic compounds 182
Periplasmic Stress 14
Phages, Prophages 260
Phosphate metabolism 23
Phospholipids 104
Plant Alkaloids 0
Plant Hormones 12
Plant-Prokaryote DOE project 1246
Plasmid related functions 5
Polysaccharides 96
Probably GTP or GMP signaling related 24
Probably Pyrimidine biosynthesis-related 2
Probably Ybbk-related hypothetical membrane proteins 4
Probably organic hydroperoxide resistance related hypothetical protein 16
Programmed Cell Death and Toxin-antitoxin Systems 11
Proline and 4-hydroxyproline 44
Proteasome related clusters 0
Protein and nucleoprotein secretion system, Type IV 100
Protein biosynthesis 606
Protein degradation 187
Protein export? 28
Protein folding 83
Protein processing and modification 108
Protein secretion system, Type I 7
Protein secretion system, Type II 18
Protein secretion system, Type III 3
Protein secretion system, Type V 4
Protein secretion system, Type VI 159
Protein secretion system, Type VII (Chaperone/Usher pathway, CU) 7
Protein secretion system, Type VIII (Extracellular nucleation/precipitation pathway, ENP) 1
Protein translocation across cytoplasmic membrane 63
Proteolytic pathway 0
Purines 379
Putative GGDEF domain protein related to agglutinin secretion 0
Putative Isoquinoline 1-oxidoreductase subunit 5
Putative asociate of RNA polymerase sigma-54 factor rpoN 32
Putrescine/GABA utilization cluster-temporal,to add to SSs 49
Pyridoxine 67
Pyrimidines 144
Pyruvate kinase associated cluster 13
Quinone cofactors 72
Quorum sensing and biofilm formation 14
RNA processing and modification 446
Recombination related cluster 2
Regulation of virulence 29
Related to Menaquinone-cytochrome C reductase 0
Resistance to antibiotics and toxic compounds 648
Reverse electron transport 0
Riboflavin, FMN, FAD 50
Ribosomal Protein L28P relates to a set of uncharacterized proteins 22
Ribosome-related cluster 20
Sarcosine oxidase 6
Selenoproteins 89
Shiga toxin cluster 8
Siderophores 23
Sodium Ion-Coupled Energetics 0
Spore DNA protection 0
Sugar Phosphotransferase Systems, PTS 2
Sugar alcohols 96
Sulfatases and sulfatase modifying factor 1 (and a hypothetical) 5
Tetrapyrroles 135
Three hypotheticals linked to lipoprotein biosynthesis 15
TldD cluster 31
Toxins and superantigens 0
Transcription 163
Translation 56
Transposable elements 42
Triacylglycerols 13
Tricarboxylate transporter 27
Two related proteases 11
Uni- Sym- and Antiporters 19
alpha-proteobacterial cluster of hypotheticals 0
proteosome related 5
recX and regulatory cluster 7
tRNA sulfuration 4
Archaea 0
Bacteria 0
Eukaryota 0
mgm4575333.3
ABC transporters 0
ATP synthases 0
Acid stress 0
Adhesion 0
Alanine, serine, and glycine 0
Aminosugars 0
Anaerobic degradation of aromatic compounds 0
Arginine; urea cycle, polyamines 0
Aromatic amino acids and derivatives 0
Bacterial cytostatics, differentiation factors and antibiotics 0
Bacteriocins, ribosomally synthesized antibacterial peptides 0
Biologically active compounds in metazoan cell defence and differentiation 0
Biosynthesis of galactoglycans and related lipopolysacharides 0
Biosynthesis of phenylpropanoids 0
Biotin 0
Branched-chain amino acids 0
CO2 fixation 0
CRISPRs and associated hypotheticals 0
CRISPs 0
Capsular and extracellular polysacchrides 0
Carbohydrates 0
Carotenoid biosynthesis 0
Cell Division 0
Cell wall of Mycobacteria 0
Central carbohydrate metabolism 0
Chemotaxis, response regulators 0
Choline bitartrate degradation, putative 0
Chromosome Replication 0
Clustering-based subsystems 0
Coenzyme A 0
Coenzyme B 0
Coenzyme F420 0
Coenzyme M 0
Cold shock 0
Cytochrome biogenesis 0
D-tyrosyl-tRNA(Tyr) deacylase (EC 3.1.-.-) cluster 0
DNA metabolism 0
DNA polymerase III epsilon cluster 0
DNA recombination 0
DNA repair 0
DNA replication 0
DNA uptake, competence 0
Detection 0
Detoxification 0
Di- and oligosaccharides 0
Electron accepting reactions 0
Electron donating reactions 0
Electron transport and photophosphorylation 0
Fatty acid metabolic cluster 0
Fatty acids 0
Fermentation 0
Flagella protein? 0
Flagellar motility in Prokaryota 0
Folate and pterines 0
Gene Transfer Agent (GTA) 0
Glutamine, glutamate, aspartate, asparagine; ammonia assimilation 0
Glycoside hydrolases 0
Gram-Negative cell wall components 0
Gram-Positive cell wall components 0
Heat shock 0
Histidine Metabolism 0
Hypothetical Related to Dihydroorate Dehydrogenase 0
Hypothetical associated with RecF 0
Hypothetical in Lysine biosynthetic cluster 0
Hypothetical lipase related to Phosphatidate metabolism 0
Hypothetical protein possible functionally linked with Alanyl-tRNA synthetase 0
Inorganic sulfur assimilation 0
Invasion and intracellular resistance 0
Isoprenoid/cell wall biosynthesis: PREDICTED UNDECAPRENYL DIPHOSPHATE PHOSPHATASE 0
Isoprenoids 0
Lipid-derived mediators 0
Lipoic acid 0
Lysine Biosynthesis 0
Lysine, threonine, methionine, and cysteine 0
Metabolism of central aromatic intermediates 0
Methylamine utilization 0
Molybdopterin oxidoreductase 0
Monosaccharides 0
NAD and NADP 0
Nucleotidyl-phosphate metabolic cluster 0
One-carbon Metabolism 0
Organic acids 0
Organic sulfur assimilation 0
Osmotic stress 0
Oxidative stress 0
Pathogenicity islands 0
Peripheral pathways for catabolism of aromatic compounds 0
Periplasmic Stress 0
Phages, Prophages 0
Phosphate metabolism 0
Phospholipids 0
Plant Alkaloids 0
Plant Hormones 0
Plant-Prokaryote DOE project 0
Plasmid related functions 0
Polysaccharides 0
Probably GTP or GMP signaling related 0
Probably Pyrimidine biosynthesis-related 0
Probably Ybbk-related hypothetical membrane proteins 0
Probably organic hydroperoxide resistance related hypothetical protein 0
Programmed Cell Death and Toxin-antitoxin Systems 0
Proline and 4-hydroxyproline 0
Proteasome related clusters 0
Protein and nucleoprotein secretion system, Type IV 0
Protein biosynthesis 0
Protein degradation 0
Protein export? 0
Protein folding 0
Protein processing and modification 0
Protein secretion system, Type I 0
Protein secretion system, Type II 0
Protein secretion system, Type III 0
Protein secretion system, Type V 0
Protein secretion system, Type VI 0
Protein secretion system, Type VII (Chaperone/Usher pathway, CU) 0
Protein secretion system, Type VIII (Extracellular nucleation/precipitation pathway, ENP) 0
Protein translocation across cytoplasmic membrane 0
Proteolytic pathway 0
Purines 0
Putative GGDEF domain protein related to agglutinin secretion 0
Putative Isoquinoline 1-oxidoreductase subunit 0
Putative asociate of RNA polymerase sigma-54 factor rpoN 0
Putrescine/GABA utilization cluster-temporal,to add to SSs 0
Pyridoxine 0
Pyrimidines 0
Pyruvate kinase associated cluster 0
Quinone cofactors 0
Quorum sensing and biofilm formation 0
RNA processing and modification 0
Recombination related cluster 0
Regulation of virulence 0
Related to Menaquinone-cytochrome C reductase 0
Resistance to antibiotics and toxic compounds 0
Reverse electron transport 0
Riboflavin, FMN, FAD 0
Ribosomal Protein L28P relates to a set of uncharacterized proteins 0
Ribosome-related cluster 0
Sarcosine oxidase 0
Selenoproteins 0
Shiga toxin cluster 0
Siderophores 0
Sodium Ion-Coupled Energetics 0
Spore DNA protection 0
Sugar Phosphotransferase Systems, PTS 0
Sugar alcohols 0
Sulfatases and sulfatase modifying factor 1 (and a hypothetical) 0
Tetrapyrroles 0
Three hypotheticals linked to lipoprotein biosynthesis 0
TldD cluster 0
Toxins and superantigens 0
Transcription 0
Translation 0
Transposable elements 0
Triacylglycerols 0
Tricarboxylate transporter 0
Two related proteases 0
Uni- Sym- and Antiporters 0
alpha-proteobacterial cluster of hypotheticals 0
proteosome related 0
recX and regulatory cluster 0
tRNA sulfuration 0
Archaea 15893
Bacteria 168162
Eukaryota 59
mgm4575334.3
ABC transporters 0
ATP synthases 0
Acid stress 0
Adhesion 0
Alanine, serine, and glycine 0
Aminosugars 0
Anaerobic degradation of aromatic compounds 0
Arginine; urea cycle, polyamines 0
Aromatic amino acids and derivatives 0
Bacterial cytostatics, differentiation factors and antibiotics 0
Bacteriocins, ribosomally synthesized antibacterial peptides 0
Biologically active compounds in metazoan cell defence and differentiation 0
Biosynthesis of galactoglycans and related lipopolysacharides 0
Biosynthesis of phenylpropanoids 0
Biotin 0
Branched-chain amino acids 0
CO2 fixation 0
CRISPRs and associated hypotheticals 0
CRISPs 0
Capsular and extracellular polysacchrides 0
Carbohydrates 0
Carotenoid biosynthesis 0
Cell Division 0
Cell wall of Mycobacteria 0
Central carbohydrate metabolism 0
Chemotaxis, response regulators 0
Choline bitartrate degradation, putative 0
Chromosome Replication 0
Clustering-based subsystems 0
Coenzyme A 0
Coenzyme B 0
Coenzyme F420 0
Coenzyme M 0
Cold shock 0
Cytochrome biogenesis 0
D-tyrosyl-tRNA(Tyr) deacylase (EC 3.1.-.-) cluster 0
DNA metabolism 0
DNA polymerase III epsilon cluster 0
DNA recombination 0
DNA repair 0
DNA replication 0
DNA uptake, competence 0
Detection 0
Detoxification 0
Di- and oligosaccharides 0
Electron accepting reactions 0
Electron donating reactions 0
Electron transport and photophosphorylation 0
Fatty acid metabolic cluster 0
Fatty acids 0
Fermentation 0
Flagella protein? 0
Flagellar motility in Prokaryota 0
Folate and pterines 0
Gene Transfer Agent (GTA) 0
Glutamine, glutamate, aspartate, asparagine; ammonia assimilation 0
Glycoside hydrolases 0
Gram-Negative cell wall components 0
Gram-Positive cell wall components 0
Heat shock 0
Histidine Metabolism 0
Hypothetical Related to Dihydroorate Dehydrogenase 0
Hypothetical associated with RecF 0
Hypothetical in Lysine biosynthetic cluster 0
Hypothetical lipase related to Phosphatidate metabolism 0
Hypothetical protein possible functionally linked with Alanyl-tRNA synthetase 0
Inorganic sulfur assimilation 0
Invasion and intracellular resistance 0
Isoprenoid/cell wall biosynthesis: PREDICTED UNDECAPRENYL DIPHOSPHATE PHOSPHATASE 0
Isoprenoids 0
Lipid-derived mediators 0
Lipoic acid 0
Lysine Biosynthesis 0
Lysine, threonine, methionine, and cysteine 0
Metabolism of central aromatic intermediates 0
Methylamine utilization 0
Molybdopterin oxidoreductase 0
Monosaccharides 0
NAD and NADP 0
Nucleotidyl-phosphate metabolic cluster 0
One-carbon Metabolism 0
Organic acids 0
Organic sulfur assimilation 0
Osmotic stress 0
Oxidative stress 0
Pathogenicity islands 0
Peripheral pathways for catabolism of aromatic compounds 0
Periplasmic Stress 0
Phages, Prophages 0
Phosphate metabolism 0
Phospholipids 0
Plant Alkaloids 0
Plant Hormones 0
Plant-Prokaryote DOE project 0
Plasmid related functions 0
Polysaccharides 0
Probably GTP or GMP signaling related 0
Probably Pyrimidine biosynthesis-related 0
Probably Ybbk-related hypothetical membrane proteins 0
Probably organic hydroperoxide resistance related hypothetical protein 0
Programmed Cell Death and Toxin-antitoxin Systems 0
Proline and 4-hydroxyproline 0
Proteasome related clusters 0
Protein and nucleoprotein secretion system, Type IV 0
Protein biosynthesis 0
Protein degradation 0
Protein export? 0
Protein folding 0
Protein processing and modification 0
Protein secretion system, Type I 0
Protein secretion system, Type II 0
Protein secretion system, Type III 0
Protein secretion system, Type V 0
Protein secretion system, Type VI 0
Protein secretion system, Type VII (Chaperone/Usher pathway, CU) 0
Protein secretion system, Type VIII (Extracellular nucleation/precipitation pathway, ENP) 0
Protein translocation across cytoplasmic membrane 0
Proteolytic pathway 0
Purines 0
Putative GGDEF domain protein related to agglutinin secretion 0
Putative Isoquinoline 1-oxidoreductase subunit 0
Putative asociate of RNA polymerase sigma-54 factor rpoN 0
Putrescine/GABA utilization cluster-temporal,to add to SSs 0
Pyridoxine 0
Pyrimidines 0
Pyruvate kinase associated cluster 0
Quinone cofactors 0
Quorum sensing and biofilm formation 0
RNA processing and modification 0
Recombination related cluster 0
Regulation of virulence 0
Related to Menaquinone-cytochrome C reductase 0
Resistance to antibiotics and toxic compounds 0
Reverse electron transport 0
Riboflavin, FMN, FAD 0
Ribosomal Protein L28P relates to a set of uncharacterized proteins 0
Ribosome-related cluster 0
Sarcosine oxidase 0
Selenoproteins 0
Shiga toxin cluster 0
Siderophores 0
Sodium Ion-Coupled Energetics 0
Spore DNA protection 0
Sugar Phosphotransferase Systems, PTS 0
Sugar alcohols 0
Sulfatases and sulfatase modifying factor 1 (and a hypothetical) 0
Tetrapyrroles 0
Three hypotheticals linked to lipoprotein biosynthesis 0
TldD cluster 0
Toxins and superantigens 0
Transcription 0
Translation 0
Transposable elements 0
Triacylglycerols 0
Tricarboxylate transporter 0
Two related proteases 0
Uni- Sym- and Antiporters 0
alpha-proteobacterial cluster of hypotheticals 0
proteosome related 0
recX and regulatory cluster 0
tRNA sulfuration 0
Archaea 0
Bacteria 164695
Eukaryota 83
mgm4575335.3
ABC transporters 0
ATP synthases 0
Acid stress 0
Adhesion 0
Alanine, serine, and glycine 0
Aminosugars 0
Anaerobic degradation of aromatic compounds 0
Arginine; urea cycle, polyamines 0
Aromatic amino acids and derivatives 0
Bacterial cytostatics, differentiation factors and antibiotics 0
Bacteriocins, ribosomally synthesized antibacterial peptides 0
Biologically active compounds in metazoan cell defence and differentiation 0
Biosynthesis of galactoglycans and related lipopolysacharides 0
Biosynthesis of phenylpropanoids 0
Biotin 0
Branched-chain amino acids 0
CO2 fixation 0
CRISPRs and associated hypotheticals 0
CRISPs 0
Capsular and extracellular polysacchrides 0
Carbohydrates 0
Carotenoid biosynthesis 0
Cell Division 0
Cell wall of Mycobacteria 0
Central carbohydrate metabolism 0
Chemotaxis, response regulators 0
Choline bitartrate degradation, putative 0
Chromosome Replication 0
Clustering-based subsystems 0
Coenzyme A 0
Coenzyme B 0
Coenzyme F420 0
Coenzyme M 0
Cold shock 0
Cytochrome biogenesis 0
D-tyrosyl-tRNA(Tyr) deacylase (EC 3.1.-.-) cluster 0
DNA metabolism 0
DNA polymerase III epsilon cluster 0
DNA recombination 0
DNA repair 0
DNA replication 0
DNA uptake, competence 0
Detection 0
Detoxification 0
Di- and oligosaccharides 0
Electron accepting reactions 0
Electron donating reactions 0
Electron transport and photophosphorylation 0
Fatty acid metabolic cluster 0
Fatty acids 0
Fermentation 0
Flagella protein? 0
Flagellar motility in Prokaryota 0
Folate and pterines 0
Gene Transfer Agent (GTA) 0
Glutamine, glutamate, aspartate, asparagine; ammonia assimilation 0
Glycoside hydrolases 0
Gram-Negative cell wall components 0
Gram-Positive cell wall components 0
Heat shock 0
Histidine Metabolism 0
Hypothetical Related to Dihydroorate Dehydrogenase 0
Hypothetical associated with RecF 0
Hypothetical in Lysine biosynthetic cluster 0
Hypothetical lipase related to Phosphatidate metabolism 0
Hypothetical protein possible functionally linked with Alanyl-tRNA synthetase 0
Inorganic sulfur assimilation 0
Invasion and intracellular resistance 0
Isoprenoid/cell wall biosynthesis: PREDICTED UNDECAPRENYL DIPHOSPHATE PHOSPHATASE 0
Isoprenoids 0
Lipid-derived mediators 0
Lipoic acid 0
Lysine Biosynthesis 0
Lysine, threonine, methionine, and cysteine 0
Metabolism of central aromatic intermediates 0
Methylamine utilization 0
Molybdopterin oxidoreductase 0
Monosaccharides 0
NAD and NADP 0
Nucleotidyl-phosphate metabolic cluster 0
One-carbon Metabolism 0
Organic acids 0
Organic sulfur assimilation 0
Osmotic stress 0
Oxidative stress 0
Pathogenicity islands 0
Peripheral pathways for catabolism of aromatic compounds 0
Periplasmic Stress 0
Phages, Prophages 0
Phosphate metabolism 0
Phospholipids 0
Plant Alkaloids 0
Plant Hormones 0
Plant-Prokaryote DOE project 0
Plasmid related functions 0
Polysaccharides 0
Probably GTP or GMP signaling related 0
Probably Pyrimidine biosynthesis-related 0
Probably Ybbk-related hypothetical membrane proteins 0
Probably organic hydroperoxide resistance related hypothetical protein 0
Programmed Cell Death and Toxin-antitoxin Systems 0
Proline and 4-hydroxyproline 0
Proteasome related clusters 0
Protein and nucleoprotein secretion system, Type IV 0
Protein biosynthesis 0
Protein degradation 0
Protein export? 0
Protein folding 0
Protein processing and modification 0
Protein secretion system, Type I 0
Protein secretion system, Type II 0
Protein secretion system, Type III 0
Protein secretion system, Type V 0
Protein secretion system, Type VI 0
Protein secretion system, Type VII (Chaperone/Usher pathway, CU) 0
Protein secretion system, Type VIII (Extracellular nucleation/precipitation pathway, ENP) 0
Protein translocation across cytoplasmic membrane 0
Proteolytic pathway 0
Purines 0
Putative GGDEF domain protein related to agglutinin secretion 0
Putative Isoquinoline 1-oxidoreductase subunit 0
Putative asociate of RNA polymerase sigma-54 factor rpoN 0
Putrescine/GABA utilization cluster-temporal,to add to SSs 0
Pyridoxine 0
Pyrimidines 0
Pyruvate kinase associated cluster 0
Quinone cofactors 0
Quorum sensing and biofilm formation 0
RNA processing and modification 0
Recombination related cluster 0
Regulation of virulence 0
Related to Menaquinone-cytochrome C reductase 0
Resistance to antibiotics and toxic compounds 0
Reverse electron transport 0
Riboflavin, FMN, FAD 0
Ribosomal Protein L28P relates to a set of uncharacterized proteins 0
Ribosome-related cluster 0
Sarcosine oxidase 0
Selenoproteins 0
Shiga toxin cluster 0
Siderophores 0
Sodium Ion-Coupled Energetics 0
Spore DNA protection 0
Sugar Phosphotransferase Systems, PTS 0
Sugar alcohols 0
Sulfatases and sulfatase modifying factor 1 (and a hypothetical) 0
Tetrapyrroles 0
Three hypotheticals linked to lipoprotein biosynthesis 0
TldD cluster 0
Toxins and superantigens 0
Transcription 0
Translation 0
Transposable elements 0
Triacylglycerols 0
Tricarboxylate transporter 0
Two related proteases 0
Uni- Sym- and Antiporters 0
alpha-proteobacterial cluster of hypotheticals 0
proteosome related 0
recX and regulatory cluster 0
tRNA sulfuration 0
Archaea 63
Bacteria 179684
Eukaryota 23
mgm4575336.3
ABC transporters 0
ATP synthases 0
Acid stress 0
Adhesion 0
Alanine, serine, and glycine 0
Aminosugars 0
Anaerobic degradation of aromatic compounds 0
Arginine; urea cycle, polyamines 0
Aromatic amino acids and derivatives 0
Bacterial cytostatics, differentiation factors and antibiotics 0
Bacteriocins, ribosomally synthesized antibacterial peptides 0
Biologically active compounds in metazoan cell defence and differentiation 0
Biosynthesis of galactoglycans and related lipopolysacharides 0
Biosynthesis of phenylpropanoids 0
Biotin 0
Branched-chain amino acids 0
CO2 fixation 0
CRISPRs and associated hypotheticals 0
CRISPs 0
Capsular and extracellular polysacchrides 0
Carbohydrates 0
Carotenoid biosynthesis 0
Cell Division 0
Cell wall of Mycobacteria 0
Central carbohydrate metabolism 0
Chemotaxis, response regulators 0
Choline bitartrate degradation, putative 0
Chromosome Replication 0
Clustering-based subsystems 0
Coenzyme A 0
Coenzyme B 0
Coenzyme F420 0
Coenzyme M 0
Cold shock 0
Cytochrome biogenesis 0
D-tyrosyl-tRNA(Tyr) deacylase (EC 3.1.-.-) cluster 0
DNA metabolism 0
DNA polymerase III epsilon cluster 0
DNA recombination 0
DNA repair 0
DNA replication 0
DNA uptake, competence 0
Detection 0
Detoxification 0
Di- and oligosaccharides 0
Electron accepting reactions 0
Electron donating reactions 0
Electron transport and photophosphorylation 0
Fatty acid metabolic cluster 0
Fatty acids 0
Fermentation 0
Flagella protein? 0
Flagellar motility in Prokaryota 0
Folate and pterines 0
Gene Transfer Agent (GTA) 0
Glutamine, glutamate, aspartate, asparagine; ammonia assimilation 0
Glycoside hydrolases 0
Gram-Negative cell wall components 0
Gram-Positive cell wall components 0
Heat shock 0
Histidine Metabolism 0
Hypothetical Related to Dihydroorate Dehydrogenase 0
Hypothetical associated with RecF 0
Hypothetical in Lysine biosynthetic cluster 0
Hypothetical lipase related to Phosphatidate metabolism 0
Hypothetical protein possible functionally linked with Alanyl-tRNA synthetase 0
Inorganic sulfur assimilation 0
Invasion and intracellular resistance 0
Isoprenoid/cell wall biosynthesis: PREDICTED UNDECAPRENYL DIPHOSPHATE PHOSPHATASE 0
Isoprenoids 0
Lipid-derived mediators 0
Lipoic acid 0
Lysine Biosynthesis 0
Lysine, threonine, methionine, and cysteine 0
Metabolism of central aromatic intermediates 0
Methylamine utilization 0
Molybdopterin oxidoreductase 0
Monosaccharides 0
NAD and NADP 0
Nucleotidyl-phosphate metabolic cluster 0
One-carbon Metabolism 0
Organic acids 0
Organic sulfur assimilation 0
Osmotic stress 0
Oxidative stress 0
Pathogenicity islands 0
Peripheral pathways for catabolism of aromatic compounds 0
Periplasmic Stress 0
Phages, Prophages 0
Phosphate metabolism 0
Phospholipids 0
Plant Alkaloids 0
Plant Hormones 0
Plant-Prokaryote DOE project 0
Plasmid related functions 0
Polysaccharides 0
Probably GTP or GMP signaling related 0
Probably Pyrimidine biosynthesis-related 0
Probably Ybbk-related hypothetical membrane proteins 0
Probably organic hydroperoxide resistance related hypothetical protein 0
Programmed Cell Death and Toxin-antitoxin Systems 0
Proline and 4-hydroxyproline 0
Proteasome related clusters 0
Protein and nucleoprotein secretion system, Type IV 0
Protein biosynthesis 0
Protein degradation 0
Protein export? 0
Protein folding 0
Protein processing and modification 0
Protein secretion system, Type I 0
Protein secretion system, Type II 0
Protein secretion system, Type III 0
Protein secretion system, Type V 0
Protein secretion system, Type VI 0
Protein secretion system, Type VII (Chaperone/Usher pathway, CU) 0
Protein secretion system, Type VIII (Extracellular nucleation/precipitation pathway, ENP) 0
Protein translocation across cytoplasmic membrane 0
Proteolytic pathway 0
Purines 0
Putative GGDEF domain protein related to agglutinin secretion 0
Putative Isoquinoline 1-oxidoreductase subunit 0
Putative asociate of RNA polymerase sigma-54 factor rpoN 0
Putrescine/GABA utilization cluster-temporal,to add to SSs 0
Pyridoxine 0
Pyrimidines 0
Pyruvate kinase associated cluster 0
Quinone cofactors 0
Quorum sensing and biofilm formation 0
RNA processing and modification 0
Recombination related cluster 0
Regulation of virulence 0
Related to Menaquinone-cytochrome C reductase 0
Resistance to antibiotics and toxic compounds 0
Reverse electron transport 0
Riboflavin, FMN, FAD 0
Ribosomal Protein L28P relates to a set of uncharacterized proteins 0
Ribosome-related cluster 0
Sarcosine oxidase 0
Selenoproteins 0
Shiga toxin cluster 0
Siderophores 0
Sodium Ion-Coupled Energetics 0
Spore DNA protection 0
Sugar Phosphotransferase Systems, PTS 0
Sugar alcohols 0
Sulfatases and sulfatase modifying factor 1 (and a hypothetical) 0
Tetrapyrroles 0
Three hypotheticals linked to lipoprotein biosynthesis 0
TldD cluster 0
Toxins and superantigens 0
Transcription 0
Translation 0
Transposable elements 0
Triacylglycerols 0
Tricarboxylate transporter 0
Two related proteases 0
Uni- Sym- and Antiporters 0
alpha-proteobacterial cluster of hypotheticals 0
proteosome related 0
recX and regulatory cluster 0
tRNA sulfuration 0
Archaea 5
Bacteria 184233
Eukaryota 81
mgm4575337.3
ABC transporters 0
ATP synthases 0
Acid stress 0
Adhesion 0
Alanine, serine, and glycine 0
Aminosugars 0
Anaerobic degradation of aromatic compounds 0
Arginine; urea cycle, polyamines 0
Aromatic amino acids and derivatives 0
Bacterial cytostatics, differentiation factors and antibiotics 0
Bacteriocins, ribosomally synthesized antibacterial peptides 0
Biologically active compounds in metazoan cell defence and differentiation 0
Biosynthesis of galactoglycans and related lipopolysacharides 0
Biosynthesis of phenylpropanoids 0
Biotin 0
Branched-chain amino acids 0
CO2 fixation 0
CRISPRs and associated hypotheticals 0
CRISPs 0
Capsular and extracellular polysacchrides 0
Carbohydrates 0
Carotenoid biosynthesis 0
Cell Division 0
Cell wall of Mycobacteria 0
Central carbohydrate metabolism 0
Chemotaxis, response regulators 0
Choline bitartrate degradation, putative 0
Chromosome Replication 0
Clustering-based subsystems 0
Coenzyme A 0
Coenzyme B 0
Coenzyme F420 0
Coenzyme M 0
Cold shock 0
Cytochrome biogenesis 0
D-tyrosyl-tRNA(Tyr) deacylase (EC 3.1.-.-) cluster 0
DNA metabolism 0
DNA polymerase III epsilon cluster 0
DNA recombination 0
DNA repair 0
DNA replication 0
DNA uptake, competence 0
Detection 0
Detoxification 0
Di- and oligosaccharides 0
Electron accepting reactions 0
Electron donating reactions 0
Electron transport and photophosphorylation 0
Fatty acid metabolic cluster 0
Fatty acids 0
Fermentation 0
Flagella protein? 0
Flagellar motility in Prokaryota 0
Folate and pterines 0
Gene Transfer Agent (GTA) 0
Glutamine, glutamate, aspartate, asparagine; ammonia assimilation 0
Glycoside hydrolases 0
Gram-Negative cell wall components 0
Gram-Positive cell wall components 0
Heat shock 0
Histidine Metabolism 0
Hypothetical Related to Dihydroorate Dehydrogenase 0
Hypothetical associated with RecF 0
Hypothetical in Lysine biosynthetic cluster 0
Hypothetical lipase related to Phosphatidate metabolism 0
Hypothetical protein possible functionally linked with Alanyl-tRNA synthetase 0
Inorganic sulfur assimilation 0
Invasion and intracellular resistance 0
Isoprenoid/cell wall biosynthesis: PREDICTED UNDECAPRENYL DIPHOSPHATE PHOSPHATASE 0
Isoprenoids 0
Lipid-derived mediators 0
Lipoic acid 0
Lysine Biosynthesis 0
Lysine, threonine, methionine, and cysteine 0
Metabolism of central aromatic intermediates 0
Methylamine utilization 0
Molybdopterin oxidoreductase 0
Monosaccharides 0
NAD and NADP 0
Nucleotidyl-phosphate metabolic cluster 0
One-carbon Metabolism 0
Organic acids 0
Organic sulfur assimilation 0
Osmotic stress 0
Oxidative stress 0
Pathogenicity islands 0
Peripheral pathways for catabolism of aromatic compounds 0
Periplasmic Stress 0
Phages, Prophages 0
Phosphate metabolism 0
Phospholipids 0
Plant Alkaloids 0
Plant Hormones 0
Plant-Prokaryote DOE project 0
Plasmid related functions 0
Polysaccharides 0
Probably GTP or GMP signaling related 0
Probably Pyrimidine biosynthesis-related 0
Probably Ybbk-related hypothetical membrane proteins 0
Probably organic hydroperoxide resistance related hypothetical protein 0
Programmed Cell Death and Toxin-antitoxin Systems 0
Proline and 4-hydroxyproline 0
Proteasome related clusters 0
Protein and nucleoprotein secretion system, Type IV 0
Protein biosynthesis 0
Protein degradation 0
Protein export? 0
Protein folding 0
Protein processing and modification 0
Protein secretion system, Type I 0
Protein secretion system, Type II 0
Protein secretion system, Type III 0
Protein secretion system, Type V 0
Protein secretion system, Type VI 0
Protein secretion system, Type VII (Chaperone/Usher pathway, CU) 0
Protein secretion system, Type VIII (Extracellular nucleation/precipitation pathway, ENP) 0
Protein translocation across cytoplasmic membrane 0
Proteolytic pathway 0
Purines 0
Putative GGDEF domain protein related to agglutinin secretion 0
Putative Isoquinoline 1-oxidoreductase subunit 0
Putative asociate of RNA polymerase sigma-54 factor rpoN 0
Putrescine/GABA utilization cluster-temporal,to add to SSs 0
Pyridoxine 0
Pyrimidines 0
Pyruvate kinase associated cluster 0
Quinone cofactors 0
Quorum sensing and biofilm formation 0
RNA processing and modification 0
Recombination related cluster 0
Regulation of virulence 0
Related to Menaquinone-cytochrome C reductase 0
Resistance to antibiotics and toxic compounds 0
Reverse electron transport 0
Riboflavin, FMN, FAD 0
Ribosomal Protein L28P relates to a set of uncharacterized proteins 0
Ribosome-related cluster 0
Sarcosine oxidase 0
Selenoproteins 0
Shiga toxin cluster 0
Siderophores 0
Sodium Ion-Coupled Energetics 0
Spore DNA protection 0
Sugar Phosphotransferase Systems, PTS 0
Sugar alcohols 0
Sulfatases and sulfatase modifying factor 1 (and a hypothetical) 0
Tetrapyrroles 0
Three hypotheticals linked to lipoprotein biosynthesis 0
TldD cluster 0
Toxins and superantigens 0
Transcription 0
Translation 0
Transposable elements 0
Triacylglycerols 0
Tricarboxylate transporter 0
Two related proteases 0
Uni- Sym- and Antiporters 0
alpha-proteobacterial cluster of hypotheticals 0
proteosome related 0
recX and regulatory cluster 0
tRNA sulfuration 0
Archaea 143
Bacteria 41632
Eukaryota 23
mgm4575338.3
ABC transporters 0
ATP synthases 0
Acid stress 0
Adhesion 0
Alanine, serine, and glycine 0
Aminosugars 0
Anaerobic degradation of aromatic compounds 0
Arginine; urea cycle, polyamines 0
Aromatic amino acids and derivatives 0
Bacterial cytostatics, differentiation factors and antibiotics 0
Bacteriocins, ribosomally synthesized antibacterial peptides 0
Biologically active compounds in metazoan cell defence and differentiation 0
Biosynthesis of galactoglycans and related lipopolysacharides 0
Biosynthesis of phenylpropanoids 0
Biotin 0
Branched-chain amino acids 0
CO2 fixation 0
CRISPRs and associated hypotheticals 0
CRISPs 0
Capsular and extracellular polysacchrides 0
Carbohydrates 0
Carotenoid biosynthesis 0
Cell Division 0
Cell wall of Mycobacteria 0
Central carbohydrate metabolism 0
Chemotaxis, response regulators 0
Choline bitartrate degradation, putative 0
Chromosome Replication 0
Clustering-based subsystems 0
Coenzyme A 0
Coenzyme B 0
Coenzyme F420 0
Coenzyme M 0
Cold shock 0
Cytochrome biogenesis 0
D-tyrosyl-tRNA(Tyr) deacylase (EC 3.1.-.-) cluster 0
DNA metabolism 0
DNA polymerase III epsilon cluster 0
DNA recombination 0
DNA repair 0
DNA replication 0
DNA uptake, competence 0
Detection 0
Detoxification 0
Di- and oligosaccharides 0
Electron accepting reactions 0
Electron donating reactions 0
Electron transport and photophosphorylation 0
Fatty acid metabolic cluster 0
Fatty acids 0
Fermentation 0
Flagella protein? 0
Flagellar motility in Prokaryota 0
Folate and pterines 0
Gene Transfer Agent (GTA) 0
Glutamine, glutamate, aspartate, asparagine; ammonia assimilation 0
Glycoside hydrolases 0
Gram-Negative cell wall components 0
Gram-Positive cell wall components 0
Heat shock 0
Histidine Metabolism 0
Hypothetical Related to Dihydroorate Dehydrogenase 0
Hypothetical associated with RecF 0
Hypothetical in Lysine biosynthetic cluster 0
Hypothetical lipase related to Phosphatidate metabolism 0
Hypothetical protein possible functionally linked with Alanyl-tRNA synthetase 0
Inorganic sulfur assimilation 0
Invasion and intracellular resistance 0
Isoprenoid/cell wall biosynthesis: PREDICTED UNDECAPRENYL DIPHOSPHATE PHOSPHATASE 0
Isoprenoids 0
Lipid-derived mediators 0
Lipoic acid 0
Lysine Biosynthesis 0
Lysine, threonine, methionine, and cysteine 0
Metabolism of central aromatic intermediates 0
Methylamine utilization 0
Molybdopterin oxidoreductase 0
Monosaccharides 0
NAD and NADP 0
Nucleotidyl-phosphate metabolic cluster 0
One-carbon Metabolism 0
Organic acids 0
Organic sulfur assimilation 0
Osmotic stress 0
Oxidative stress 0
Pathogenicity islands 0
Peripheral pathways for catabolism of aromatic compounds 0
Periplasmic Stress 0
Phages, Prophages 0
Phosphate metabolism 0
Phospholipids 0
Plant Alkaloids 0
Plant Hormones 0
Plant-Prokaryote DOE project 0
Plasmid related functions 0
Polysaccharides 0
Probably GTP or GMP signaling related 0
Probably Pyrimidine biosynthesis-related 0
Probably Ybbk-related hypothetical membrane proteins 0
Probably organic hydroperoxide resistance related hypothetical protein 0
Programmed Cell Death and Toxin-antitoxin Systems 0
Proline and 4-hydroxyproline 0
Proteasome related clusters 0
Protein and nucleoprotein secretion system, Type IV 0
Protein biosynthesis 0
Protein degradation 0
Protein export? 0
Protein folding 0
Protein processing and modification 0
Protein secretion system, Type I 0
Protein secretion system, Type II 0
Protein secretion system, Type III 0
Protein secretion system, Type V 0
Protein secretion system, Type VI 0
Protein secretion system, Type VII (Chaperone/Usher pathway, CU) 0
Protein secretion system, Type VIII (Extracellular nucleation/precipitation pathway, ENP) 0
Protein translocation across cytoplasmic membrane 0
Proteolytic pathway 0
Purines 0
Putative GGDEF domain protein related to agglutinin secretion 0
Putative Isoquinoline 1-oxidoreductase subunit 0
Putative asociate of RNA polymerase sigma-54 factor rpoN 0
Putrescine/GABA utilization cluster-temporal,to add to SSs 0
Pyridoxine 0
Pyrimidines 0
Pyruvate kinase associated cluster 0
Quinone cofactors 0
Quorum sensing and biofilm formation 0
RNA processing and modification 0
Recombination related cluster 0
Regulation of virulence 0
Related to Menaquinone-cytochrome C reductase 0
Resistance to antibiotics and toxic compounds 0
Reverse electron transport 0
Riboflavin, FMN, FAD 0
Ribosomal Protein L28P relates to a set of uncharacterized proteins 0
Ribosome-related cluster 0
Sarcosine oxidase 0
Selenoproteins 0
Shiga toxin cluster 0
Siderophores 0
Sodium Ion-Coupled Energetics 0
Spore DNA protection 0
Sugar Phosphotransferase Systems, PTS 0
Sugar alcohols 0
Sulfatases and sulfatase modifying factor 1 (and a hypothetical) 0
Tetrapyrroles 0
Three hypotheticals linked to lipoprotein biosynthesis 0
TldD cluster 0
Toxins and superantigens 0
Transcription 0
Translation 0
Transposable elements 0
Triacylglycerols 0
Tricarboxylate transporter 0
Two related proteases 0
Uni- Sym- and Antiporters 0
alpha-proteobacterial cluster of hypotheticals 0
proteosome related 0
recX and regulatory cluster 0
tRNA sulfuration 0
Archaea 2
Bacteria 104039
Eukaryota 296
mgm4575339.3
ABC transporters 0
ATP synthases 0
Acid stress 0
Adhesion 0
Alanine, serine, and glycine 0
Aminosugars 0
Anaerobic degradation of aromatic compounds 0
Arginine; urea cycle, polyamines 0
Aromatic amino acids and derivatives 0
Bacterial cytostatics, differentiation factors and antibiotics 0
Bacteriocins, ribosomally synthesized antibacterial peptides 0
Biologically active compounds in metazoan cell defence and differentiation 0
Biosynthesis of galactoglycans and related lipopolysacharides 0
Biosynthesis of phenylpropanoids 0
Biotin 0
Branched-chain amino acids 0
CO2 fixation 0
CRISPRs and associated hypotheticals 0
CRISPs 0
Capsular and extracellular polysacchrides 0
Carbohydrates 0
Carotenoid biosynthesis 0
Cell Division 0
Cell wall of Mycobacteria 0
Central carbohydrate metabolism 0
Chemotaxis, response regulators 0
Choline bitartrate degradation, putative 0
Chromosome Replication 0
Clustering-based subsystems 0
Coenzyme A 0
Coenzyme B 0
Coenzyme F420 0
Coenzyme M 0
Cold shock 0
Cytochrome biogenesis 0
D-tyrosyl-tRNA(Tyr) deacylase (EC 3.1.-.-) cluster 0
DNA metabolism 0
DNA polymerase III epsilon cluster 0
DNA recombination 0
DNA repair 0
DNA replication 0
DNA uptake, competence 0
Detection 0
Detoxification 0
Di- and oligosaccharides 0
Electron accepting reactions 0
Electron donating reactions 0
Electron transport and photophosphorylation 0
Fatty acid metabolic cluster 0
Fatty acids 0
Fermentation 0
Flagella protein? 0
Flagellar motility in Prokaryota 0
Folate and pterines 0
Gene Transfer Agent (GTA) 0
Glutamine, glutamate, aspartate, asparagine; ammonia assimilation 0
Glycoside hydrolases 0
Gram-Negative cell wall components 0
Gram-Positive cell wall components 0
Heat shock 0
Histidine Metabolism 0
Hypothetical Related to Dihydroorate Dehydrogenase 0
Hypothetical associated with RecF 0
Hypothetical in Lysine biosynthetic cluster 0
Hypothetical lipase related to Phosphatidate metabolism 0
Hypothetical protein possible functionally linked with Alanyl-tRNA synthetase 0
Inorganic sulfur assimilation 0
Invasion and intracellular resistance 0
Isoprenoid/cell wall biosynthesis: PREDICTED UNDECAPRENYL DIPHOSPHATE PHOSPHATASE 0
Isoprenoids 0
Lipid-derived mediators 0
Lipoic acid 0
Lysine Biosynthesis 0
Lysine, threonine, methionine, and cysteine 0
Metabolism of central aromatic intermediates 0
Methylamine utilization 0
Molybdopterin oxidoreductase 0
Monosaccharides 0
NAD and NADP 0
Nucleotidyl-phosphate metabolic cluster 0
One-carbon Metabolism 0
Organic acids 0
Organic sulfur assimilation 0
Osmotic stress 0
Oxidative stress 0
Pathogenicity islands 0
Peripheral pathways for catabolism of aromatic compounds 0
Periplasmic Stress 0
Phages, Prophages 0
Phosphate metabolism 0
Phospholipids 0
Plant Alkaloids 0
Plant Hormones 0
Plant-Prokaryote DOE project 0
Plasmid related functions 0
Polysaccharides 0
Probably GTP or GMP signaling related 0
Probably Pyrimidine biosynthesis-related 0
Probably Ybbk-related hypothetical membrane proteins 0
Probably organic hydroperoxide resistance related hypothetical protein 0
Programmed Cell Death and Toxin-antitoxin Systems 0
Proline and 4-hydroxyproline 0
Proteasome related clusters 0
Protein and nucleoprotein secretion system, Type IV 0
Protein biosynthesis 0
Protein degradation 0
Protein export? 0
Protein folding 0
Protein processing and modification 0
Protein secretion system, Type I 0
Protein secretion system, Type II 0
Protein secretion system, Type III 0
Protein secretion system, Type V 0
Protein secretion system, Type VI 0
Protein secretion system, Type VII (Chaperone/Usher pathway, CU) 0
Protein secretion system, Type VIII (Extracellular nucleation/precipitation pathway, ENP) 0
Protein translocation across cytoplasmic membrane 0
Proteolytic pathway 0
Purines 0
Putative GGDEF domain protein related to agglutinin secretion 0
Putative Isoquinoline 1-oxidoreductase subunit 0
Putative asociate of RNA polymerase sigma-54 factor rpoN 0
Putrescine/GABA utilization cluster-temporal,to add to SSs 0
Pyridoxine 0
Pyrimidines 0
Pyruvate kinase associated cluster 0
Quinone cofactors 0
Quorum sensing and biofilm formation 0
RNA processing and modification 0
Recombination related cluster 0
Regulation of virulence 0
Related to Menaquinone-cytochrome C reductase 0
Resistance to antibiotics and toxic compounds 0
Reverse electron transport 0
Riboflavin, FMN, FAD 0
Ribosomal Protein L28P relates to a set of uncharacterized proteins 0
Ribosome-related cluster 0
Sarcosine oxidase 0
Selenoproteins 0
Shiga toxin cluster 0
Siderophores 0
Sodium Ion-Coupled Energetics 0
Spore DNA protection 0
Sugar Phosphotransferase Systems, PTS 0
Sugar alcohols 0
Sulfatases and sulfatase modifying factor 1 (and a hypothetical) 0
Tetrapyrroles 0
Three hypotheticals linked to lipoprotein biosynthesis 0
TldD cluster 0
Toxins and superantigens 0
Transcription 0
Translation 0
Transposable elements 0
Triacylglycerols 0
Tricarboxylate transporter 0
Two related proteases 0
Uni- Sym- and Antiporters 0
alpha-proteobacterial cluster of hypotheticals 0
proteosome related 0
recX and regulatory cluster 0
tRNA sulfuration 0
Archaea 7
Bacteria 132356
Eukaryota 67
mgm4575340.3
ABC transporters 0
ATP synthases 0
Acid stress 0
Adhesion 0
Alanine, serine, and glycine 0
Aminosugars 0
Anaerobic degradation of aromatic compounds 0
Arginine; urea cycle, polyamines 0
Aromatic amino acids and derivatives 0
Bacterial cytostatics, differentiation factors and antibiotics 0
Bacteriocins, ribosomally synthesized antibacterial peptides 0
Biologically active compounds in metazoan cell defence and differentiation 0
Biosynthesis of galactoglycans and related lipopolysacharides 0
Biosynthesis of phenylpropanoids 0
Biotin 0
Branched-chain amino acids 0
CO2 fixation 0
CRISPRs and associated hypotheticals 0
CRISPs 0
Capsular and extracellular polysacchrides 0
Carbohydrates 0
Carotenoid biosynthesis 0
Cell Division 0
Cell wall of Mycobacteria 0
Central carbohydrate metabolism 0
Chemotaxis, response regulators 0
Choline bitartrate degradation, putative 0
Chromosome Replication 0
Clustering-based subsystems 0
Coenzyme A 0
Coenzyme B 0
Coenzyme F420 0
Coenzyme M 0
Cold shock 0
Cytochrome biogenesis 0
D-tyrosyl-tRNA(Tyr) deacylase (EC 3.1.-.-) cluster 0
DNA metabolism 0
DNA polymerase III epsilon cluster 0
DNA recombination 0
DNA repair 0
DNA replication 0
DNA uptake, competence 0
Detection 0
Detoxification 0
Di- and oligosaccharides 0
Electron accepting reactions 0
Electron donating reactions 0
Electron transport and photophosphorylation 0
Fatty acid metabolic cluster 0
Fatty acids 0
Fermentation 0
Flagella protein? 0
Flagellar motility in Prokaryota 0
Folate and pterines 0
Gene Transfer Agent (GTA) 0
Glutamine, glutamate, aspartate, asparagine; ammonia assimilation 0
Glycoside hydrolases 0
Gram-Negative cell wall components 0
Gram-Positive cell wall components 0
Heat shock 0
Histidine Metabolism 0
Hypothetical Related to Dihydroorate Dehydrogenase 0
Hypothetical associated with RecF 0
Hypothetical in Lysine biosynthetic cluster 0
Hypothetical lipase related to Phosphatidate metabolism 0
Hypothetical protein possible functionally linked with Alanyl-tRNA synthetase 0
Inorganic sulfur assimilation 0
Invasion and intracellular resistance 0
Isoprenoid/cell wall biosynthesis: PREDICTED UNDECAPRENYL DIPHOSPHATE PHOSPHATASE 0
Isoprenoids 0
Lipid-derived mediators 0
Lipoic acid 0
Lysine Biosynthesis 0
Lysine, threonine, methionine, and cysteine 0
Metabolism of central aromatic intermediates 0
Methylamine utilization 0
Molybdopterin oxidoreductase 0
Monosaccharides 0
NAD and NADP 0
Nucleotidyl-phosphate metabolic cluster 0
One-carbon Metabolism 0
Organic acids 0
Organic sulfur assimilation 0
Osmotic stress 0
Oxidative stress 0
Pathogenicity islands 0
Peripheral pathways for catabolism of aromatic compounds 0
Periplasmic Stress 0
Phages, Prophages 0
Phosphate metabolism 0
Phospholipids 0
Plant Alkaloids 0
Plant Hormones 0
Plant-Prokaryote DOE project 0
Plasmid related functions 0
Polysaccharides 0
Probably GTP or GMP signaling related 0
Probably Pyrimidine biosynthesis-related 0
Probably Ybbk-related hypothetical membrane proteins 0
Probably organic hydroperoxide resistance related hypothetical protein 0
Programmed Cell Death and Toxin-antitoxin Systems 0
Proline and 4-hydroxyproline 0
Proteasome related clusters 0
Protein and nucleoprotein secretion system, Type IV 0
Protein biosynthesis 0
Protein degradation 0
Protein export? 0
Protein folding 0
Protein processing and modification 0
Protein secretion system, Type I 0
Protein secretion system, Type II 0
Protein secretion system, Type III 0
Protein secretion system, Type V 0
Protein secretion system, Type VI 0
Protein secretion system, Type VII (Chaperone/Usher pathway, CU) 0
Protein secretion system, Type VIII (Extracellular nucleation/precipitation pathway, ENP) 0
Protein translocation across cytoplasmic membrane 0
Proteolytic pathway 0
Purines 0
Putative GGDEF domain protein related to agglutinin secretion 0
Putative Isoquinoline 1-oxidoreductase subunit 0
Putative asociate of RNA polymerase sigma-54 factor rpoN 0
Putrescine/GABA utilization cluster-temporal,to add to SSs 0
Pyridoxine 0
Pyrimidines 0
Pyruvate kinase associated cluster 0
Quinone cofactors 0
Quorum sensing and biofilm formation 0
RNA processing and modification 0
Recombination related cluster 0
Regulation of virulence 0
Related to Menaquinone-cytochrome C reductase 0
Resistance to antibiotics and toxic compounds 0
Reverse electron transport 0
Riboflavin, FMN, FAD 0
Ribosomal Protein L28P relates to a set of uncharacterized proteins 0
Ribosome-related cluster 0
Sarcosine oxidase 0
Selenoproteins 0
Shiga toxin cluster 0
Siderophores 0
Sodium Ion-Coupled Energetics 0
Spore DNA protection 0
Sugar Phosphotransferase Systems, PTS 0
Sugar alcohols 0
Sulfatases and sulfatase modifying factor 1 (and a hypothetical) 0
Tetrapyrroles 0
Three hypotheticals linked to lipoprotein biosynthesis 0
TldD cluster 0
Toxins and superantigens 0
Transcription 0
Translation 0
Transposable elements 0
Triacylglycerols 0
Tricarboxylate transporter 0
Two related proteases 0
Uni- Sym- and Antiporters 0
alpha-proteobacterial cluster of hypotheticals 0
proteosome related 0
recX and regulatory cluster 0
tRNA sulfuration 0
Archaea 4
Bacteria 125248
Eukaryota 9
mgm4575341.3
ABC transporters 0
ATP synthases 0
Acid stress 0
Adhesion 0
Alanine, serine, and glycine 0
Aminosugars 0
Anaerobic degradation of aromatic compounds 0
Arginine; urea cycle, polyamines 0
Aromatic amino acids and derivatives 0
Bacterial cytostatics, differentiation factors and antibiotics 0
Bacteriocins, ribosomally synthesized antibacterial peptides 0
Biologically active compounds in metazoan cell defence and differentiation 0
Biosynthesis of galactoglycans and related lipopolysacharides 0
Biosynthesis of phenylpropanoids 0
Biotin 0
Branched-chain amino acids 0
CO2 fixation 0
CRISPRs and associated hypotheticals 0
CRISPs 0
Capsular and extracellular polysacchrides 0
Carbohydrates 0
Carotenoid biosynthesis 0
Cell Division 0
Cell wall of Mycobacteria 0
Central carbohydrate metabolism 0
Chemotaxis, response regulators 0
Choline bitartrate degradation, putative 0
Chromosome Replication 0
Clustering-based subsystems 0
Coenzyme A 0
Coenzyme B 0
Coenzyme F420 0
Coenzyme M 0
Cold shock 0
Cytochrome biogenesis 0
D-tyrosyl-tRNA(Tyr) deacylase (EC 3.1.-.-) cluster 0
DNA metabolism 0
DNA polymerase III epsilon cluster 0
DNA recombination 0
DNA repair 0
DNA replication 0
DNA uptake, competence 0
Detection 0
Detoxification 0
Di- and oligosaccharides 0
Electron accepting reactions 0
Electron donating reactions 0
Electron transport and photophosphorylation 0
Fatty acid metabolic cluster 0
Fatty acids 0
Fermentation 0
Flagella protein? 0
Flagellar motility in Prokaryota 0
Folate and pterines 0
Gene Transfer Agent (GTA) 0
Glutamine, glutamate, aspartate, asparagine; ammonia assimilation 0
Glycoside hydrolases 0
Gram-Negative cell wall components 0
Gram-Positive cell wall components 0
Heat shock 0
Histidine Metabolism 0
Hypothetical Related to Dihydroorate Dehydrogenase 0
Hypothetical associated with RecF 0
Hypothetical in Lysine biosynthetic cluster 0
Hypothetical lipase related to Phosphatidate metabolism 0
Hypothetical protein possible functionally linked with Alanyl-tRNA synthetase 0
Inorganic sulfur assimilation 0
Invasion and intracellular resistance 0
Isoprenoid/cell wall biosynthesis: PREDICTED UNDECAPRENYL DIPHOSPHATE PHOSPHATASE 0
Isoprenoids 0
Lipid-derived mediators 0
Lipoic acid 0
Lysine Biosynthesis 0
Lysine, threonine, methionine, and cysteine 0
Metabolism of central aromatic intermediates 0
Methylamine utilization 0
Molybdopterin oxidoreductase 0
Monosaccharides 0
NAD and NADP 0
Nucleotidyl-phosphate metabolic cluster 0
One-carbon Metabolism 0
Organic acids 0
Organic sulfur assimilation 0
Osmotic stress 0
Oxidative stress 0
Pathogenicity islands 0
Peripheral pathways for catabolism of aromatic compounds 0
Periplasmic Stress 0
Phages, Prophages 0
Phosphate metabolism 0
Phospholipids 0
Plant Alkaloids 0
Plant Hormones 0
Plant-Prokaryote DOE project 0
Plasmid related functions 0
Polysaccharides 0
Probably GTP or GMP signaling related 0
Probably Pyrimidine biosynthesis-related 0
Probably Ybbk-related hypothetical membrane proteins 0
Probably organic hydroperoxide resistance related hypothetical protein 0
Programmed Cell Death and Toxin-antitoxin Systems 0
Proline and 4-hydroxyproline 0
Proteasome related clusters 0
Protein and nucleoprotein secretion system, Type IV 0
Protein biosynthesis 0
Protein degradation 0
Protein export? 0
Protein folding 0
Protein processing and modification 0
Protein secretion system, Type I 0
Protein secretion system, Type II 0
Protein secretion system, Type III 0
Protein secretion system, Type V 0
Protein secretion system, Type VI 0
Protein secretion system, Type VII (Chaperone/Usher pathway, CU) 0
Protein secretion system, Type VIII (Extracellular nucleation/precipitation pathway, ENP) 0
Protein translocation across cytoplasmic membrane 0
Proteolytic pathway 0
Purines 0
Putative GGDEF domain protein related to agglutinin secretion 0
Putative Isoquinoline 1-oxidoreductase subunit 0
Putative asociate of RNA polymerase sigma-54 factor rpoN 0
Putrescine/GABA utilization cluster-temporal,to add to SSs 0
Pyridoxine 0
Pyrimidines 0
Pyruvate kinase associated cluster 0
Quinone cofactors 0
Quorum sensing and biofilm formation 0
RNA processing and modification 0
Recombination related cluster 0
Regulation of virulence 0
Related to Menaquinone-cytochrome C reductase 0
Resistance to antibiotics and toxic compounds 0
Reverse electron transport 0
Riboflavin, FMN, FAD 0
Ribosomal Protein L28P relates to a set of uncharacterized proteins 0
Ribosome-related cluster 0
Sarcosine oxidase 0
Selenoproteins 0
Shiga toxin cluster 0
Siderophores 0
Sodium Ion-Coupled Energetics 0
Spore DNA protection 0
Sugar Phosphotransferase Systems, PTS 0
Sugar alcohols 0
Sulfatases and sulfatase modifying factor 1 (and a hypothetical) 0
Tetrapyrroles 0
Three hypotheticals linked to lipoprotein biosynthesis 0
TldD cluster 0
Toxins and superantigens 0
Transcription 0
Translation 0
Transposable elements 0
Triacylglycerols 0
Tricarboxylate transporter 0
Two related proteases 0
Uni- Sym- and Antiporters 0
alpha-proteobacterial cluster of hypotheticals 0
proteosome related 0
recX and regulatory cluster 0
tRNA sulfuration 0
Archaea 1
Bacteria 59671
Eukaryota 333
mgm4575342.3
ABC transporters 0
ATP synthases 0
Acid stress 0
Adhesion 0
Alanine, serine, and glycine 0
Aminosugars 0
Anaerobic degradation of aromatic compounds 0
Arginine; urea cycle, polyamines 0
Aromatic amino acids and derivatives 0
Bacterial cytostatics, differentiation factors and antibiotics 0
Bacteriocins, ribosomally synthesized antibacterial peptides 0
Biologically active compounds in metazoan cell defence and differentiation 0
Biosynthesis of galactoglycans and related lipopolysacharides 0
Biosynthesis of phenylpropanoids 0
Biotin 0
Branched-chain amino acids 0
CO2 fixation 0
CRISPRs and associated hypotheticals 0
CRISPs 0
Capsular and extracellular polysacchrides 0
Carbohydrates 0
Carotenoid biosynthesis 0
Cell Division 0
Cell wall of Mycobacteria 0
Central carbohydrate metabolism 0
Chemotaxis, response regulators 0
Choline bitartrate degradation, putative 0
Chromosome Replication 0
Clustering-based subsystems 0
Coenzyme A 0
Coenzyme B 0
Coenzyme F420 0
Coenzyme M 0
Cold shock 0
Cytochrome biogenesis 0
D-tyrosyl-tRNA(Tyr) deacylase (EC 3.1.-.-) cluster 0
DNA metabolism 0
DNA polymerase III epsilon cluster 0
DNA recombination 0
DNA repair 0
DNA replication 0
DNA uptake, competence 0
Detection 0
Detoxification 0
Di- and oligosaccharides 0
Electron accepting reactions 0
Electron donating reactions 0
Electron transport and photophosphorylation 0
Fatty acid metabolic cluster 0
Fatty acids 0
Fermentation 0
Flagella protein? 0
Flagellar motility in Prokaryota 0
Folate and pterines 0
Gene Transfer Agent (GTA) 0
Glutamine, glutamate, aspartate, asparagine; ammonia assimilation 0
Glycoside hydrolases 0
Gram-Negative cell wall components 0
Gram-Positive cell wall components 0
Heat shock 0
Histidine Metabolism 0
Hypothetical Related to Dihydroorate Dehydrogenase 0
Hypothetical associated with RecF 0
Hypothetical in Lysine biosynthetic cluster 0
Hypothetical lipase related to Phosphatidate metabolism 0
Hypothetical protein possible functionally linked with Alanyl-tRNA synthetase 0
Inorganic sulfur assimilation 0
Invasion and intracellular resistance 0
Isoprenoid/cell wall biosynthesis: PREDICTED UNDECAPRENYL DIPHOSPHATE PHOSPHATASE 0
Isoprenoids 0
Lipid-derived mediators 0
Lipoic acid 0
Lysine Biosynthesis 0
Lysine, threonine, methionine, and cysteine 0
Metabolism of central aromatic intermediates 0
Methylamine utilization 0
Molybdopterin oxidoreductase 0
Monosaccharides 0
NAD and NADP 0
Nucleotidyl-phosphate metabolic cluster 0
One-carbon Metabolism 0
Organic acids 0
Organic sulfur assimilation 0
Osmotic stress 0
Oxidative stress 0
Pathogenicity islands 0
Peripheral pathways for catabolism of aromatic compounds 0
Periplasmic Stress 0
Phages, Prophages 0
Phosphate metabolism 0
Phospholipids 0
Plant Alkaloids 0
Plant Hormones 0
Plant-Prokaryote DOE project 0
Plasmid related functions 0
Polysaccharides 0
Probably GTP or GMP signaling related 0
Probably Pyrimidine biosynthesis-related 0
Probably Ybbk-related hypothetical membrane proteins 0
Probably organic hydroperoxide resistance related hypothetical protein 0
Programmed Cell Death and Toxin-antitoxin Systems 0
Proline and 4-hydroxyproline 0
Proteasome related clusters 0
Protein and nucleoprotein secretion system, Type IV 0
Protein biosynthesis 0
Protein degradation 0
Protein export? 0
Protein folding 0
Protein processing and modification 0
Protein secretion system, Type I 0
Protein secretion system, Type II 0
Protein secretion system, Type III 0
Protein secretion system, Type V 0
Protein secretion system, Type VI 0
Protein secretion system, Type VII (Chaperone/Usher pathway, CU) 0
Protein secretion system, Type VIII (Extracellular nucleation/precipitation pathway, ENP) 0
Protein translocation across cytoplasmic membrane 0
Proteolytic pathway 0
Purines 0
Putative GGDEF domain protein related to agglutinin secretion 0
Putative Isoquinoline 1-oxidoreductase subunit 0
Putative asociate of RNA polymerase sigma-54 factor rpoN 0
Putrescine/GABA utilization cluster-temporal,to add to SSs 0
Pyridoxine 0
Pyrimidines 0
Pyruvate kinase associated cluster 0
Quinone cofactors 0
Quorum sensing and biofilm formation 0
RNA processing and modification 0
Recombination related cluster 0
Regulation of virulence 0
Related to Menaquinone-cytochrome C reductase 0
Resistance to antibiotics and toxic compounds 0
Reverse electron transport 0
Riboflavin, FMN, FAD 0
Ribosomal Protein L28P relates to a set of uncharacterized proteins 0
Ribosome-related cluster 0
Sarcosine oxidase 0
Selenoproteins 0
Shiga toxin cluster 0
Siderophores 0
Sodium Ion-Coupled Energetics 0
Spore DNA protection 0
Sugar Phosphotransferase Systems, PTS 0
Sugar alcohols 0
Sulfatases and sulfatase modifying factor 1 (and a hypothetical) 0
Tetrapyrroles 0
Three hypotheticals linked to lipoprotein biosynthesis 0
TldD cluster 0
Toxins and superantigens 0
Transcription 0
Translation 0
Transposable elements 0
Triacylglycerols 0
Tricarboxylate transporter 0
Two related proteases 0
Uni- Sym- and Antiporters 0
alpha-proteobacterial cluster of hypotheticals 0
proteosome related 0
recX and regulatory cluster 0
tRNA sulfuration 0
Archaea 0
Bacteria 104783
Eukaryota 621
mgm4575343.3
ABC transporters 0
ATP synthases 0
Acid stress 0
Adhesion 0
Alanine, serine, and glycine 0
Aminosugars 0
Anaerobic degradation of aromatic compounds 0
Arginine; urea cycle, polyamines 0
Aromatic amino acids and derivatives 0
Bacterial cytostatics, differentiation factors and antibiotics 0
Bacteriocins, ribosomally synthesized antibacterial peptides 0
Biologically active compounds in metazoan cell defence and differentiation 0
Biosynthesis of galactoglycans and related lipopolysacharides 0
Biosynthesis of phenylpropanoids 0
Biotin 0
Branched-chain amino acids 0
CO2 fixation 0
CRISPRs and associated hypotheticals 0
CRISPs 0
Capsular and extracellular polysacchrides 0
Carbohydrates 0
Carotenoid biosynthesis 0
Cell Division 0
Cell wall of Mycobacteria 0
Central carbohydrate metabolism 0
Chemotaxis, response regulators 0
Choline bitartrate degradation, putative 0
Chromosome Replication 0
Clustering-based subsystems 0
Coenzyme A 0
Coenzyme B 0
Coenzyme F420 0
Coenzyme M 0
Cold shock 0
Cytochrome biogenesis 0
D-tyrosyl-tRNA(Tyr) deacylase (EC 3.1.-.-) cluster 0
DNA metabolism 0
DNA polymerase III epsilon cluster 0
DNA recombination 0
DNA repair 0
DNA replication 0
DNA uptake, competence 0
Detection 0
Detoxification 0
Di- and oligosaccharides 0
Electron accepting reactions 0
Electron donating reactions 0
Electron transport and photophosphorylation 0
Fatty acid metabolic cluster 0
Fatty acids 0
Fermentation 0
Flagella protein? 0
Flagellar motility in Prokaryota 0
Folate and pterines 0
Gene Transfer Agent (GTA) 0
Glutamine, glutamate, aspartate, asparagine; ammonia assimilation 0
Glycoside hydrolases 0
Gram-Negative cell wall components 0
Gram-Positive cell wall components 0
Heat shock 0
Histidine Metabolism 0
Hypothetical Related to Dihydroorate Dehydrogenase 0
Hypothetical associated with RecF 0
Hypothetical in Lysine biosynthetic cluster 0
Hypothetical lipase related to Phosphatidate metabolism 0
Hypothetical protein possible functionally linked with Alanyl-tRNA synthetase 0
Inorganic sulfur assimilation 0
Invasion and intracellular resistance 0
Isoprenoid/cell wall biosynthesis: PREDICTED UNDECAPRENYL DIPHOSPHATE PHOSPHATASE 0
Isoprenoids 0
Lipid-derived mediators 0
Lipoic acid 0
Lysine Biosynthesis 0
Lysine, threonine, methionine, and cysteine 0
Metabolism of central aromatic intermediates 0
Methylamine utilization 0
Molybdopterin oxidoreductase 0
Monosaccharides 0
NAD and NADP 0
Nucleotidyl-phosphate metabolic cluster 0
One-carbon Metabolism 0
Organic acids 0
Organic sulfur assimilation 0
Osmotic stress 0
Oxidative stress 0
Pathogenicity islands 0
Peripheral pathways for catabolism of aromatic compounds 0
Periplasmic Stress 0
Phages, Prophages 0
Phosphate metabolism 0
Phospholipids 0
Plant Alkaloids 0
Plant Hormones 0
Plant-Prokaryote DOE project 0
Plasmid related functions 0
Polysaccharides 0
Probably GTP or GMP signaling related 0
Probably Pyrimidine biosynthesis-related 0
Probably Ybbk-related hypothetical membrane proteins 0
Probably organic hydroperoxide resistance related hypothetical protein 0
Programmed Cell Death and Toxin-antitoxin Systems 0
Proline and 4-hydroxyproline 0
Proteasome related clusters 0
Protein and nucleoprotein secretion system, Type IV 0
Protein biosynthesis 0
Protein degradation 0
Protein export? 0
Protein folding 0
Protein processing and modification 0
Protein secretion system, Type I 0
Protein secretion system, Type II 0
Protein secretion system, Type III 0
Protein secretion system, Type V 0
Protein secretion system, Type VI 0
Protein secretion system, Type VII (Chaperone/Usher pathway, CU) 0
Protein secretion system, Type VIII (Extracellular nucleation/precipitation pathway, ENP) 0
Protein translocation across cytoplasmic membrane 0
Proteolytic pathway 0
Purines 0
Putative GGDEF domain protein related to agglutinin secretion 0
Putative Isoquinoline 1-oxidoreductase subunit 0
Putative asociate of RNA polymerase sigma-54 factor rpoN 0
Putrescine/GABA utilization cluster-temporal,to add to SSs 0
Pyridoxine 0
Pyrimidines 0
Pyruvate kinase associated cluster 0
Quinone cofactors 0
Quorum sensing and biofilm formation 0
RNA processing and modification 0
Recombination related cluster 0
Regulation of virulence 0
Related to Menaquinone-cytochrome C reductase 0
Resistance to antibiotics and toxic compounds 0
Reverse electron transport 0
Riboflavin, FMN, FAD 0
Ribosomal Protein L28P relates to a set of uncharacterized proteins 0
Ribosome-related cluster 0
Sarcosine oxidase 0
Selenoproteins 0
Shiga toxin cluster 0
Siderophores 0
Sodium Ion-Coupled Energetics 0
Spore DNA protection 0
Sugar Phosphotransferase Systems, PTS 0
Sugar alcohols 0
Sulfatases and sulfatase modifying factor 1 (and a hypothetical) 0
Tetrapyrroles 0
Three hypotheticals linked to lipoprotein biosynthesis 0
TldD cluster 0
Toxins and superantigens 0
Transcription 0
Translation 0
Transposable elements 0
Triacylglycerols 0
Tricarboxylate transporter 0
Two related proteases 0
Uni- Sym- and Antiporters 0
alpha-proteobacterial cluster of hypotheticals 0
proteosome related 0
recX and regulatory cluster 0
tRNA sulfuration 0
Archaea 493
Bacteria 148494
Eukaryota 1
mgm4575344.3
ABC transporters 0
ATP synthases 0
Acid stress 0
Adhesion 0
Alanine, serine, and glycine 0
Aminosugars 0
Anaerobic degradation of aromatic compounds 0
Arginine; urea cycle, polyamines 0
Aromatic amino acids and derivatives 0
Bacterial cytostatics, differentiation factors and antibiotics 0
Bacteriocins, ribosomally synthesized antibacterial peptides 0
Biologically active compounds in metazoan cell defence and differentiation 0
Biosynthesis of galactoglycans and related lipopolysacharides 0
Biosynthesis of phenylpropanoids 0
Biotin 0
Branched-chain amino acids 0
CO2 fixation 0
CRISPRs and associated hypotheticals 0
CRISPs 0
Capsular and extracellular polysacchrides 0
Carbohydrates 0
Carotenoid biosynthesis 0
Cell Division 0
Cell wall of Mycobacteria 0
Central carbohydrate metabolism 0
Chemotaxis, response regulators 0
Choline bitartrate degradation, putative 0
Chromosome Replication 0
Clustering-based subsystems 0
Coenzyme A 0
Coenzyme B 0
Coenzyme F420 0
Coenzyme M 0
Cold shock 0
Cytochrome biogenesis 0
D-tyrosyl-tRNA(Tyr) deacylase (EC 3.1.-.-) cluster 0
DNA metabolism 0
DNA polymerase III epsilon cluster 0
DNA recombination 0
DNA repair 0
DNA replication 0
DNA uptake, competence 0
Detection 0
Detoxification 0
Di- and oligosaccharides 0
Electron accepting reactions 0
Electron donating reactions 0
Electron transport and photophosphorylation 0
Fatty acid metabolic cluster 0
Fatty acids 0
Fermentation 0
Flagella protein? 0
Flagellar motility in Prokaryota 0
Folate and pterines 0
Gene Transfer Agent (GTA) 0
Glutamine, glutamate, aspartate, asparagine; ammonia assimilation 0
Glycoside hydrolases 0
Gram-Negative cell wall components 0
Gram-Positive cell wall components 0
Heat shock 0
Histidine Metabolism 0
Hypothetical Related to Dihydroorate Dehydrogenase 0
Hypothetical associated with RecF 0
Hypothetical in Lysine biosynthetic cluster 0
Hypothetical lipase related to Phosphatidate metabolism 0
Hypothetical protein possible functionally linked with Alanyl-tRNA synthetase 0
Inorganic sulfur assimilation 0
Invasion and intracellular resistance 0
Isoprenoid/cell wall biosynthesis: PREDICTED UNDECAPRENYL DIPHOSPHATE PHOSPHATASE 0
Isoprenoids 0
Lipid-derived mediators 0
Lipoic acid 0
Lysine Biosynthesis 0
Lysine, threonine, methionine, and cysteine 0
Metabolism of central aromatic intermediates 0
Methylamine utilization 0
Molybdopterin oxidoreductase 0
Monosaccharides 0
NAD and NADP 0
Nucleotidyl-phosphate metabolic cluster 0
One-carbon Metabolism 0
Organic acids 0
Organic sulfur assimilation 0
Osmotic stress 0
Oxidative stress 0
Pathogenicity islands 0
Peripheral pathways for catabolism of aromatic compounds 0
Periplasmic Stress 0
Phages, Prophages 0
Phosphate metabolism 0
Phospholipids 0
Plant Alkaloids 0
Plant Hormones 0
Plant-Prokaryote DOE project 0
Plasmid related functions 0
Polysaccharides 0
Probably GTP or GMP signaling related 0
Probably Pyrimidine biosynthesis-related 0
Probably Ybbk-related hypothetical membrane proteins 0
Probably organic hydroperoxide resistance related hypothetical protein 0
Programmed Cell Death and Toxin-antitoxin Systems 0
Proline and 4-hydroxyproline 0
Proteasome related clusters 0
Protein and nucleoprotein secretion system, Type IV 0
Protein biosynthesis 0
Protein degradation 0
Protein export? 0
Protein folding 0
Protein processing and modification 0
Protein secretion system, Type I 0
Protein secretion system, Type II 0
Protein secretion system, Type III 0
Protein secretion system, Type V 0
Protein secretion system, Type VI 0
Protein secretion system, Type VII (Chaperone/Usher pathway, CU) 0
Protein secretion system, Type VIII (Extracellular nucleation/precipitation pathway, ENP) 0
Protein translocation across cytoplasmic membrane 0
Proteolytic pathway 0
Purines 0
Putative GGDEF domain protein related to agglutinin secretion 0
Putative Isoquinoline 1-oxidoreductase subunit 0
Putative asociate of RNA polymerase sigma-54 factor rpoN 0
Putrescine/GABA utilization cluster-temporal,to add to SSs 0
Pyridoxine 0
Pyrimidines 0
Pyruvate kinase associated cluster 0
Quinone cofactors 0
Quorum sensing and biofilm formation 0
RNA processing and modification 0
Recombination related cluster 0
Regulation of virulence 0
Related to Menaquinone-cytochrome C reductase 0
Resistance to antibiotics and toxic compounds 0
Reverse electron transport 0
Riboflavin, FMN, FAD 0
Ribosomal Protein L28P relates to a set of uncharacterized proteins 0
Ribosome-related cluster 0
Sarcosine oxidase 0
Selenoproteins 0
Shiga toxin cluster 0
Siderophores 0
Sodium Ion-Coupled Energetics 0
Spore DNA protection 0
Sugar Phosphotransferase Systems, PTS 0
Sugar alcohols 0
Sulfatases and sulfatase modifying factor 1 (and a hypothetical) 0
Tetrapyrroles 0
Three hypotheticals linked to lipoprotein biosynthesis 0
TldD cluster 0
Toxins and superantigens 0
Transcription 0
Translation 0
Transposable elements 0
Triacylglycerols 0
Tricarboxylate transporter 0
Two related proteases 0
Uni- Sym- and Antiporters 0
alpha-proteobacterial cluster of hypotheticals 0
proteosome related 0
recX and regulatory cluster 0
tRNA sulfuration 0
Archaea 4882
Bacteria 266691
Eukaryota 6458
mgm4575345.3
ABC transporters 0
ATP synthases 0
Acid stress 0
Adhesion 0
Alanine, serine, and glycine 0
Aminosugars 0
Anaerobic degradation of aromatic compounds 0
Arginine; urea cycle, polyamines 0
Aromatic amino acids and derivatives 0
Bacterial cytostatics, differentiation factors and antibiotics 0
Bacteriocins, ribosomally synthesized antibacterial peptides 0
Biologically active compounds in metazoan cell defence and differentiation 0
Biosynthesis of galactoglycans and related lipopolysacharides 0
Biosynthesis of phenylpropanoids 0
Biotin 0
Branched-chain amino acids 0
CO2 fixation 0
CRISPRs and associated hypotheticals 0
CRISPs 0
Capsular and extracellular polysacchrides 0
Carbohydrates 0
Carotenoid biosynthesis 0
Cell Division 0
Cell wall of Mycobacteria 0
Central carbohydrate metabolism 0
Chemotaxis, response regulators 0
Choline bitartrate degradation, putative 0
Chromosome Replication 0
Clustering-based subsystems 0
Coenzyme A 0
Coenzyme B 0
Coenzyme F420 0
Coenzyme M 0
Cold shock 0
Cytochrome biogenesis 0
D-tyrosyl-tRNA(Tyr) deacylase (EC 3.1.-.-) cluster 0
DNA metabolism 0
DNA polymerase III epsilon cluster 0
DNA recombination 0
DNA repair 0
DNA replication 0
DNA uptake, competence 0
Detection 0
Detoxification 0
Di- and oligosaccharides 0
Electron accepting reactions 0
Electron donating reactions 0
Electron transport and photophosphorylation 0
Fatty acid metabolic cluster 0
Fatty acids 0
Fermentation 0
Flagella protein? 0
Flagellar motility in Prokaryota 0
Folate and pterines 0
Gene Transfer Agent (GTA) 0
Glutamine, glutamate, aspartate, asparagine; ammonia assimilation 0
Glycoside hydrolases 0
Gram-Negative cell wall components 0
Gram-Positive cell wall components 0
Heat shock 0
Histidine Metabolism 0
Hypothetical Related to Dihydroorate Dehydrogenase 0
Hypothetical associated with RecF 0
Hypothetical in Lysine biosynthetic cluster 0
Hypothetical lipase related to Phosphatidate metabolism 0
Hypothetical protein possible functionally linked with Alanyl-tRNA synthetase 0
Inorganic sulfur assimilation 0
Invasion and intracellular resistance 0
Isoprenoid/cell wall biosynthesis: PREDICTED UNDECAPRENYL DIPHOSPHATE PHOSPHATASE 0
Isoprenoids 0
Lipid-derived mediators 0
Lipoic acid 0
Lysine Biosynthesis 0
Lysine, threonine, methionine, and cysteine 0
Metabolism of central aromatic intermediates 0
Methylamine utilization 0
Molybdopterin oxidoreductase 0
Monosaccharides 0
NAD and NADP 0
Nucleotidyl-phosphate metabolic cluster 0
One-carbon Metabolism 0
Organic acids 0
Organic sulfur assimilation 0
Osmotic stress 0
Oxidative stress 0
Pathogenicity islands 0
Peripheral pathways for catabolism of aromatic compounds 0
Periplasmic Stress 0
Phages, Prophages 0
Phosphate metabolism 0
Phospholipids 0
Plant Alkaloids 0
Plant Hormones 0
Plant-Prokaryote DOE project 0
Plasmid related functions 0
Polysaccharides 0
Probably GTP or GMP signaling related 0
Probably Pyrimidine biosynthesis-related 0
Probably Ybbk-related hypothetical membrane proteins 0
Probably organic hydroperoxide resistance related hypothetical protein 0
Programmed Cell Death and Toxin-antitoxin Systems 0
Proline and 4-hydroxyproline 0
Proteasome related clusters 0
Protein and nucleoprotein secretion system, Type IV 0
Protein biosynthesis 0
Protein degradation 0
Protein export? 0
Protein folding 0
Protein processing and modification 0
Protein secretion system, Type I 0
Protein secretion system, Type II 0
Protein secretion system, Type III 0
Protein secretion system, Type V 0
Protein secretion system, Type VI 0
Protein secretion system, Type VII (Chaperone/Usher pathway, CU) 0
Protein secretion system, Type VIII (Extracellular nucleation/precipitation pathway, ENP) 0
Protein translocation across cytoplasmic membrane 0
Proteolytic pathway 0
Purines 0
Putative GGDEF domain protein related to agglutinin secretion 0
Putative Isoquinoline 1-oxidoreductase subunit 0
Putative asociate of RNA polymerase sigma-54 factor rpoN 0
Putrescine/GABA utilization cluster-temporal,to add to SSs 0
Pyridoxine 0
Pyrimidines 0
Pyruvate kinase associated cluster 0
Quinone cofactors 0
Quorum sensing and biofilm formation 0
RNA processing and modification 0
Recombination related cluster 0
Regulation of virulence 0
Related to Menaquinone-cytochrome C reductase 0
Resistance to antibiotics and toxic compounds 0
Reverse electron transport 0
Riboflavin, FMN, FAD 0
Ribosomal Protein L28P relates to a set of uncharacterized proteins 0
Ribosome-related cluster 0
Sarcosine oxidase 0
Selenoproteins 0
Shiga toxin cluster 0
Siderophores 0
Sodium Ion-Coupled Energetics 0
Spore DNA protection 0
Sugar Phosphotransferase Systems, PTS 0
Sugar alcohols 0
Sulfatases and sulfatase modifying factor 1 (and a hypothetical) 0
Tetrapyrroles 0
Three hypotheticals linked to lipoprotein biosynthesis 0
TldD cluster 0
Toxins and superantigens 0
Transcription 0
Translation 0
Transposable elements 0
Triacylglycerols 0
Tricarboxylate transporter 0
Two related proteases 0
Uni- Sym- and Antiporters 0
alpha-proteobacterial cluster of hypotheticals 0
proteosome related 0
recX and regulatory cluster 0
tRNA sulfuration 0
Archaea 559
Bacteria 187155
Eukaryota 82
mgm4575346.3
ABC transporters 0
ATP synthases 0
Acid stress 0
Adhesion 0
Alanine, serine, and glycine 0
Aminosugars 0
Anaerobic degradation of aromatic compounds 0
Arginine; urea cycle, polyamines 0
Aromatic amino acids and derivatives 0
Bacterial cytostatics, differentiation factors and antibiotics 0
Bacteriocins, ribosomally synthesized antibacterial peptides 0
Biologically active compounds in metazoan cell defence and differentiation 0
Biosynthesis of galactoglycans and related lipopolysacharides 0
Biosynthesis of phenylpropanoids 0
Biotin 0
Branched-chain amino acids 0
CO2 fixation 0
CRISPRs and associated hypotheticals 0
CRISPs 0
Capsular and extracellular polysacchrides 0
Carbohydrates 0
Carotenoid biosynthesis 0
Cell Division 0
Cell wall of Mycobacteria 0
Central carbohydrate metabolism 0
Chemotaxis, response regulators 0
Choline bitartrate degradation, putative 0
Chromosome Replication 0
Clustering-based subsystems 0
Coenzyme A 0
Coenzyme B 0
Coenzyme F420 0
Coenzyme M 0
Cold shock 0
Cytochrome biogenesis 0
D-tyrosyl-tRNA(Tyr) deacylase (EC 3.1.-.-) cluster 0
DNA metabolism 0
DNA polymerase III epsilon cluster 0
DNA recombination 0
DNA repair 0
DNA replication 0
DNA uptake, competence 0
Detection 0
Detoxification 0
Di- and oligosaccharides 0
Electron accepting reactions 0
Electron donating reactions 0
Electron transport and photophosphorylation 0
Fatty acid metabolic cluster 0
Fatty acids 0
Fermentation 0
Flagella protein? 0
Flagellar motility in Prokaryota 0
Folate and pterines 0
Gene Transfer Agent (GTA) 0
Glutamine, glutamate, aspartate, asparagine; ammonia assimilation 0
Glycoside hydrolases 0
Gram-Negative cell wall components 0
Gram-Positive cell wall components 0
Heat shock 0
Histidine Metabolism 0
Hypothetical Related to Dihydroorate Dehydrogenase 0
Hypothetical associated with RecF 0
Hypothetical in Lysine biosynthetic cluster 0
Hypothetical lipase related to Phosphatidate metabolism 0
Hypothetical protein possible functionally linked with Alanyl-tRNA synthetase 0
Inorganic sulfur assimilation 0
Invasion and intracellular resistance 0
Isoprenoid/cell wall biosynthesis: PREDICTED UNDECAPRENYL DIPHOSPHATE PHOSPHATASE 0
Isoprenoids 0
Lipid-derived mediators 0
Lipoic acid 0
Lysine Biosynthesis 0
Lysine, threonine, methionine, and cysteine 0
Metabolism of central aromatic intermediates 0
Methylamine utilization 0
Molybdopterin oxidoreductase 0
Monosaccharides 0
NAD and NADP 0
Nucleotidyl-phosphate metabolic cluster 0
One-carbon Metabolism 0
Organic acids 0
Organic sulfur assimilation 0
Osmotic stress 0
Oxidative stress 0
Pathogenicity islands 0
Peripheral pathways for catabolism of aromatic compounds 0
Periplasmic Stress 0
Phages, Prophages 0
Phosphate metabolism 0
Phospholipids 0
Plant Alkaloids 0
Plant Hormones 0
Plant-Prokaryote DOE project 0
Plasmid related functions 0
Polysaccharides 0
Probably GTP or GMP signaling related 0
Probably Pyrimidine biosynthesis-related 0
Probably Ybbk-related hypothetical membrane proteins 0
Probably organic hydroperoxide resistance related hypothetical protein 0
Programmed Cell Death and Toxin-antitoxin Systems 0
Proline and 4-hydroxyproline 0
Proteasome related clusters 0
Protein and nucleoprotein secretion system, Type IV 0
Protein biosynthesis 0
Protein degradation 0
Protein export? 0
Protein folding 0
Protein processing and modification 0
Protein secretion system, Type I 0
Protein secretion system, Type II 0
Protein secretion system, Type III 0
Protein secretion system, Type V 0
Protein secretion system, Type VI 0
Protein secretion system, Type VII (Chaperone/Usher pathway, CU) 0
Protein secretion system, Type VIII (Extracellular nucleation/precipitation pathway, ENP) 0
Protein translocation across cytoplasmic membrane 0
Proteolytic pathway 0
Purines 0
Putative GGDEF domain protein related to agglutinin secretion 0
Putative Isoquinoline 1-oxidoreductase subunit 0
Putative asociate of RNA polymerase sigma-54 factor rpoN 0
Putrescine/GABA utilization cluster-temporal,to add to SSs 0
Pyridoxine 0
Pyrimidines 0
Pyruvate kinase associated cluster 0
Quinone cofactors 0
Quorum sensing and biofilm formation 0
RNA processing and modification 0
Recombination related cluster 0
Regulation of virulence 0
Related to Menaquinone-cytochrome C reductase 0
Resistance to antibiotics and toxic compounds 0
Reverse electron transport 0
Riboflavin, FMN, FAD 0
Ribosomal Protein L28P relates to a set of uncharacterized proteins 0
Ribosome-related cluster 0
Sarcosine oxidase 0
Selenoproteins 0
Shiga toxin cluster 0
Siderophores 0
Sodium Ion-Coupled Energetics 0
Spore DNA protection 0
Sugar Phosphotransferase Systems, PTS 0
Sugar alcohols 0
Sulfatases and sulfatase modifying factor 1 (and a hypothetical) 0
Tetrapyrroles 0
Three hypotheticals linked to lipoprotein biosynthesis 0
TldD cluster 0
Toxins and superantigens 0
Transcription 0
Translation 0
Transposable elements 0
Triacylglycerols 0
Tricarboxylate transporter 0
Two related proteases 0
Uni- Sym- and Antiporters 0
alpha-proteobacterial cluster of hypotheticals 0
proteosome related 0
recX and regulatory cluster 0
tRNA sulfuration 0
Archaea 9173
Bacteria 187264
Eukaryota 334
mgm4575347.3
ABC transporters 0
ATP synthases 0
Acid stress 0
Adhesion 0
Alanine, serine, and glycine 0
Aminosugars 0
Anaerobic degradation of aromatic compounds 0
Arginine; urea cycle, polyamines 0
Aromatic amino acids and derivatives 0
Bacterial cytostatics, differentiation factors and antibiotics 0
Bacteriocins, ribosomally synthesized antibacterial peptides 0
Biologically active compounds in metazoan cell defence and differentiation 0
Biosynthesis of galactoglycans and related lipopolysacharides 0
Biosynthesis of phenylpropanoids 0
Biotin 0
Branched-chain amino acids 0
CO2 fixation 0
CRISPRs and associated hypotheticals 0
CRISPs 0
Capsular and extracellular polysacchrides 0
Carbohydrates 0
Carotenoid biosynthesis 0
Cell Division 0
Cell wall of Mycobacteria 0
Central carbohydrate metabolism 0
Chemotaxis, response regulators 0
Choline bitartrate degradation, putative 0
Chromosome Replication 0
Clustering-based subsystems 0
Coenzyme A 0
Coenzyme B 0
Coenzyme F420 0
Coenzyme M 0
Cold shock 0
Cytochrome biogenesis 0
D-tyrosyl-tRNA(Tyr) deacylase (EC 3.1.-.-) cluster 0
DNA metabolism 0
DNA polymerase III epsilon cluster 0
DNA recombination 0
DNA repair 0
DNA replication 0
DNA uptake, competence 0
Detection 0
Detoxification 0
Di- and oligosaccharides 0
Electron accepting reactions 0
Electron donating reactions 0
Electron transport and photophosphorylation 0
Fatty acid metabolic cluster 0
Fatty acids 0
Fermentation 0
Flagella protein? 0
Flagellar motility in Prokaryota 0
Folate and pterines 0
Gene Transfer Agent (GTA) 0
Glutamine, glutamate, aspartate, asparagine; ammonia assimilation 0
Glycoside hydrolases 0
Gram-Negative cell wall components 0
Gram-Positive cell wall components 0
Heat shock 0
Histidine Metabolism 0
Hypothetical Related to Dihydroorate Dehydrogenase 0
Hypothetical associated with RecF 0
Hypothetical in Lysine biosynthetic cluster 0
Hypothetical lipase related to Phosphatidate metabolism 0
Hypothetical protein possible functionally linked with Alanyl-tRNA synthetase 0
Inorganic sulfur assimilation 0
Invasion and intracellular resistance 0
Isoprenoid/cell wall biosynthesis: PREDICTED UNDECAPRENYL DIPHOSPHATE PHOSPHATASE 0
Isoprenoids 0
Lipid-derived mediators 0
Lipoic acid 0
Lysine Biosynthesis 0
Lysine, threonine, methionine, and cysteine 0
Metabolism of central aromatic intermediates 0
Methylamine utilization 0
Molybdopterin oxidoreductase 0
Monosaccharides 0
NAD and NADP 0
Nucleotidyl-phosphate metabolic cluster 0
One-carbon Metabolism 0
Organic acids 0
Organic sulfur assimilation 0
Osmotic stress 0
Oxidative stress 0
Pathogenicity islands 0
Peripheral pathways for catabolism of aromatic compounds 0
Periplasmic Stress 0
Phages, Prophages 0
Phosphate metabolism 0
Phospholipids 0
Plant Alkaloids 0
Plant Hormones 0
Plant-Prokaryote DOE project 0
Plasmid related functions 0
Polysaccharides 0
Probably GTP or GMP signaling related 0
Probably Pyrimidine biosynthesis-related 0
Probably Ybbk-related hypothetical membrane proteins 0
Probably organic hydroperoxide resistance related hypothetical protein 0
Programmed Cell Death and Toxin-antitoxin Systems 0
Proline and 4-hydroxyproline 0
Proteasome related clusters 0
Protein and nucleoprotein secretion system, Type IV 0
Protein biosynthesis 0
Protein degradation 0
Protein export? 0
Protein folding 0
Protein processing and modification 0
Protein secretion system, Type I 0
Protein secretion system, Type II 0
Protein secretion system, Type III 0
Protein secretion system, Type V 0
Protein secretion system, Type VI 0
Protein secretion system, Type VII (Chaperone/Usher pathway, CU) 0
Protein secretion system, Type VIII (Extracellular nucleation/precipitation pathway, ENP) 0
Protein translocation across cytoplasmic membrane 0
Proteolytic pathway 0
Purines 0
Putative GGDEF domain protein related to agglutinin secretion 0
Putative Isoquinoline 1-oxidoreductase subunit 0
Putative asociate of RNA polymerase sigma-54 factor rpoN 0
Putrescine/GABA utilization cluster-temporal,to add to SSs 0
Pyridoxine 0
Pyrimidines 0
Pyruvate kinase associated cluster 0
Quinone cofactors 0
Quorum sensing and biofilm formation 0
RNA processing and modification 0
Recombination related cluster 0
Regulation of virulence 0
Related to Menaquinone-cytochrome C reductase 0
Resistance to antibiotics and toxic compounds 0
Reverse electron transport 0
Riboflavin, FMN, FAD 0
Ribosomal Protein L28P relates to a set of uncharacterized proteins 0
Ribosome-related cluster 0
Sarcosine oxidase 0
Selenoproteins 0
Shiga toxin cluster 0
Siderophores 0
Sodium Ion-Coupled Energetics 0
Spore DNA protection 0
Sugar Phosphotransferase Systems, PTS 0
Sugar alcohols 0
Sulfatases and sulfatase modifying factor 1 (and a hypothetical) 0
Tetrapyrroles 0
Three hypotheticals linked to lipoprotein biosynthesis 0
TldD cluster 0
Toxins and superantigens 0
Transcription 0
Translation 0
Transposable elements 0
Triacylglycerols 0
Tricarboxylate transporter 0
Two related proteases 0
Uni- Sym- and Antiporters 0
alpha-proteobacterial cluster of hypotheticals 0
proteosome related 0
recX and regulatory cluster 0
tRNA sulfuration 0
Archaea 2354
Bacteria 100992
Eukaryota 183
mgm4575348.3
ABC transporters 0
ATP synthases 0
Acid stress 0
Adhesion 0
Alanine, serine, and glycine 0
Aminosugars 0
Anaerobic degradation of aromatic compounds 0
Arginine; urea cycle, polyamines 0
Aromatic amino acids and derivatives 0
Bacterial cytostatics, differentiation factors and antibiotics 0
Bacteriocins, ribosomally synthesized antibacterial peptides 0
Biologically active compounds in metazoan cell defence and differentiation 0
Biosynthesis of galactoglycans and related lipopolysacharides 0
Biosynthesis of phenylpropanoids 0
Biotin 0
Branched-chain amino acids 0
CO2 fixation 0
CRISPRs and associated hypotheticals 0
CRISPs 0
Capsular and extracellular polysacchrides 0
Carbohydrates 0
Carotenoid biosynthesis 0
Cell Division 0
Cell wall of Mycobacteria 0
Central carbohydrate metabolism 0
Chemotaxis, response regulators 0
Choline bitartrate degradation, putative 0
Chromosome Replication 0
Clustering-based subsystems 0
Coenzyme A 0
Coenzyme B 0
Coenzyme F420 0
Coenzyme M 0
Cold shock 0
Cytochrome biogenesis 0
D-tyrosyl-tRNA(Tyr) deacylase (EC 3.1.-.-) cluster 0
DNA metabolism 0
DNA polymerase III epsilon cluster 0
DNA recombination 0
DNA repair 0
DNA replication 0
DNA uptake, competence 0
Detection 0
Detoxification 0
Di- and oligosaccharides 0
Electron accepting reactions 0
Electron donating reactions 0
Electron transport and photophosphorylation 0
Fatty acid metabolic cluster 0
Fatty acids 0
Fermentation 0
Flagella protein? 0
Flagellar motility in Prokaryota 0
Folate and pterines 0
Gene Transfer Agent (GTA) 0
Glutamine, glutamate, aspartate, asparagine; ammonia assimilation 0
Glycoside hydrolases 0
Gram-Negative cell wall components 0
Gram-Positive cell wall components 0
Heat shock 0
Histidine Metabolism 0
Hypothetical Related to Dihydroorate Dehydrogenase 0
Hypothetical associated with RecF 0
Hypothetical in Lysine biosynthetic cluster 0
Hypothetical lipase related to Phosphatidate metabolism 0
Hypothetical protein possible functionally linked with Alanyl-tRNA synthetase 0
Inorganic sulfur assimilation 0
Invasion and intracellular resistance 0
Isoprenoid/cell wall biosynthesis: PREDICTED UNDECAPRENYL DIPHOSPHATE PHOSPHATASE 0
Isoprenoids 0
Lipid-derived mediators 0
Lipoic acid 0
Lysine Biosynthesis 0
Lysine, threonine, methionine, and cysteine 0
Metabolism of central aromatic intermediates 0
Methylamine utilization 0
Molybdopterin oxidoreductase 0
Monosaccharides 0
NAD and NADP 0
Nucleotidyl-phosphate metabolic cluster 0
One-carbon Metabolism 0
Organic acids 0
Organic sulfur assimilation 0
Osmotic stress 0
Oxidative stress 0
Pathogenicity islands 0
Peripheral pathways for catabolism of aromatic compounds 0
Periplasmic Stress 0
Phages, Prophages 0
Phosphate metabolism 0
Phospholipids 0
Plant Alkaloids 0
Plant Hormones 0
Plant-Prokaryote DOE project 0
Plasmid related functions 0
Polysaccharides 0
Probably GTP or GMP signaling related 0
Probably Pyrimidine biosynthesis-related 0
Probably Ybbk-related hypothetical membrane proteins 0
Probably organic hydroperoxide resistance related hypothetical protein 0
Programmed Cell Death and Toxin-antitoxin Systems 0
Proline and 4-hydroxyproline 0
Proteasome related clusters 0
Protein and nucleoprotein secretion system, Type IV 0
Protein biosynthesis 0
Protein degradation 0
Protein export? 0
Protein folding 0
Protein processing and modification 0
Protein secretion system, Type I 0
Protein secretion system, Type II 0
Protein secretion system, Type III 0
Protein secretion system, Type V 0
Protein secretion system, Type VI 0
Protein secretion system, Type VII (Chaperone/Usher pathway, CU) 0
Protein secretion system, Type VIII (Extracellular nucleation/precipitation pathway, ENP) 0
Protein translocation across cytoplasmic membrane 0
Proteolytic pathway 0
Purines 0
Putative GGDEF domain protein related to agglutinin secretion 0
Putative Isoquinoline 1-oxidoreductase subunit 0
Putative asociate of RNA polymerase sigma-54 factor rpoN 0
Putrescine/GABA utilization cluster-temporal,to add to SSs 0
Pyridoxine 0
Pyrimidines 0
Pyruvate kinase associated cluster 0
Quinone cofactors 0
Quorum sensing and biofilm formation 0
RNA processing and modification 0
Recombination related cluster 0
Regulation of virulence 0
Related to Menaquinone-cytochrome C reductase 0
Resistance to antibiotics and toxic compounds 0
Reverse electron transport 0
Riboflavin, FMN, FAD 0
Ribosomal Protein L28P relates to a set of uncharacterized proteins 0
Ribosome-related cluster 0
Sarcosine oxidase 0
Selenoproteins 0
Shiga toxin cluster 0
Siderophores 0
Sodium Ion-Coupled Energetics 0
Spore DNA protection 0
Sugar Phosphotransferase Systems, PTS 0
Sugar alcohols 0
Sulfatases and sulfatase modifying factor 1 (and a hypothetical) 0
Tetrapyrroles 0
Three hypotheticals linked to lipoprotein biosynthesis 0
TldD cluster 0
Toxins and superantigens 0
Transcription 0
Translation 0
Transposable elements 0
Triacylglycerols 0
Tricarboxylate transporter 0
Two related proteases 0
Uni- Sym- and Antiporters 0
alpha-proteobacterial cluster of hypotheticals 0
proteosome related 0
recX and regulatory cluster 0
tRNA sulfuration 0
Archaea 15
Bacteria 55272
Eukaryota 5
[id:] derived with merge.biom(x = xx1, y = xx4)
[generated_by:] matR: metagenomics analysis tools for R (0.9.1) on [date:] 2019-12-11 22:28:51
[type:] sparse Function table (164x23 of which 984 nonzero)
[format:] Biological Observation Matrix 1.0
Warning message:
matR: merging different 'type's forces common 'type'
Warning message:
matR: merging with rows in common takes row metadata from 'x'
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.