merTools: Tools for Analyzing Mixed Effect Regression Models
Version 0.3.0

Provides methods for extracting results from mixed-effect model objects fit with the 'lme4' package. Allows construction of prediction intervals efficiently from large scale linear and generalized linear mixed-effects models.

AuthorJared E. Knowles [aut, cre], Carl Frederick [aut]
Date of publication2016-12-12 18:30:31
MaintainerJared E. Knowles <jknowles@gmail.com>
LicenseGPL (>= 2)
Version0.3.0
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("merTools")

Getting started

README.md
An Introduction to merTools"
Prediction Intervals from merMod Objects"

Popular man pages

fastdisp: Display model fit summary of merMod objects, fast
plotREsim: Plot the results of a simulation of the random effects
predictInterval: Predict from merMod objects with a prediction interval
reTermCount: Count the number of random effect terms
RMSE.merMod: Estimate the Root Mean Squared Error (RMSE) for a lmerMod
shuffle: Randomly reorder a dataframe
stripAttributes: Remove attributes from a data.frame
See all...

All man pages Function index File listing

Man pages

averageObs: Find the average observation for a merMod object
buildModelMatrix: Build model matrix
collapseFrame: Collapse a dataframe to a single average row
draw: Draw a single observation out of an object matching some...
expectedRank: Calculate the expected rank of random coefficients that...
fastdisp: Display model fit summary of merMod objects, fast
FEsim: Simulate fixed effects from merMod 'FEsim' simulates fixed...
findFormFuns: 'findFormFuns' used by averageObs to calculate proper...
formulaBuild: Clean formula
hsb: A subset of data from the 1982 High School and Beyond survey...
ICC: Calculate the intraclass correlation using mixed effect...
levelfun: Parse merMod levels
merModList: Apply a multilevel model to a list of data frames
merTools: merTools: Provides methods for extracting and exploring...
mkNewReTrms: Utility function to make RE terms objects
modelFixedEff: Extract averaged fixed effect parameters across a list of...
modelInfo: Extract model information from a merMod
modelRandEffStats: Extract data.frame of random effect statistics from merMod...
plotFEsim: Plot the results of a simulation of the fixed effects
plotREsim: Plot the results of a simulation of the random effects
predictInterval: Predict from merMod objects with a prediction interval
print.merModList: Print the results of a merMod list
randomObs: Select a random observation from model data
REcorrExtract: Extract the correlations between the slopes and the...
REextract: Extracts random effects
REimpact: Calculate the weighted mean of fitted values for various...
reOnly: Random Effects formula only
REquantile: Identify group level associated with RE quantile
REsdExtract: Extract the standard deviation of the random effects from a...
REsim: Simulate random effects from merMod 'REsim' simulates random...
reTermCount: Count the number of random effect terms
reTermNames: Get names of random effect terms in a model object
RHSForm: Parse merMod formulas
RMSE.merMod: Estimate the Root Mean Squared Error (RMSE) for a lmerMod
sanitizeNames: Clean up variable names in data frames
setup_parallel: Set up parallel environment
shinyMer: Launch a shiny app to explore your merMod interactively
shuffle: Randomly reorder a dataframe
stripAttributes: Remove attributes from a data.frame
subBoot: Bootstrap a subset of an lme4 model
subsetList: Subset a data.frame using a list of conditions
superFactor: Create a factor with unobserved levels
thetaExtract: Extract theta parameters from a merMod model
VarCorr.merModList: Extract the variances and correlations for random effects...
wiggle: Assign an observation to different values

Functions

FEsim Man page Source code
ICC Man page Source code
REcorrExtract Man page Source code
REextract Man page Source code
REimpact Man page Source code
REquantile Man page Source code
REsdExtract Man page Source code
REsim Man page Source code
RHSForm Man page Source code
RMSE.merMod Man page Source code
VarCorr.merModList Man page Source code
averageObs Man page Source code
bglmerModList Man page Source code
blmerModList Man page Source code
buildModelMatrix Man page Source code
collapseFrame Man page Source code
draw Man page Source code
draw.merMod Man page Source code
easyVarCorr Source code
expectedRank Man page Source code
fastdisp Man page Source code
findFormFuns Man page Source code
formulaBuild Man page Source code
glmerModList Man page Source code
hsb Man page
levelfun Man page Source code
lmerModList Man page Source code
merTools Man page
merTools-package Man page
mkNewReTrms Man page Source code
modelFixedEff Man page Source code
modelInfo Man page Source code
modelRandEffStats Man page Source code
plotFEsim Man page Source code
plotREsim Man page Source code
predictInterval Man page Source code
print.merModList Man page Source code
randomObs Man page Source code
reOnly Man page Source code
reTermCount Man page Source code
reTermNames Man page Source code
residDF.merMod Source code
safeDeparse Source code
sanitizeNames Man page Source code
setup_parallel Man page Source code
shinyMer Man page Source code
shuffle Man page Source code
stripAttributes Man page Source code
subBoot Man page Source code
subsetList Man page Source code
superFactor Man page Source code
thetaExtract Man page Source code
trimModelFrame Source code
wiggle Man page Source code
zzz Source code

Files

inst
inst/shiny-apps
inst/shiny-apps/shinyMer
inst/shiny-apps/shinyMer/ui.R
inst/shiny-apps/shinyMer/server.r
inst/shiny-apps/shinyMer/global.R
inst/doc
inst/doc/Using_predictInterval.html
inst/doc/merToolsIntro.html
inst/doc/Using_predictInterval.Rmd
inst/doc/Using_predictInterval.R
inst/doc/merToolsIntro.R
inst/doc/merToolsIntro.Rmd
inst/modelFigure.R
tests
tests/shinyAppTests
tests/shinyAppTests/test-shinyApps.R
tests/comparisons
tests/comparisons/wheelReinvention.R
tests/timings
tests/timings/predictSpeed.R
tests/timings/Compare_bootMer_KF.R
tests/timings/test_fastdisp.R
tests/testthat.R
tests/testthat
tests/testthat/test_subboot.R
tests/testthat/test_expectedRank.R
tests/testthat/test_substEff.R
tests/testthat/test_seeds.R
tests/testthat/test_plots.R
tests/testthat/test_predict.R
tests/testthat/test_merModList.R
tests/testthat/test_merData.R
tests/testthat/test_merExtract.R
tests/testthat/test_helpers.R
NAMESPACE
NEWS.md
data
data/hsb.rda
R
R/shinyMer.R
R/merExtract.R
R/helpers.R
R/merTools-package.r
R/parallel.R
R/subBoot.R
R/merList.R
R/merSubstEff.R
R/merExpectedRank.R
R/merPredict.R
R/merFastDisplay.R
R/merPlots.R
R/zzz.R
R/merData.R
vignettes
vignettes/Using_predictInterval.Rmd
vignettes/merToolsIntro.Rmd
README.md
MD5
build
build/vignette.rds
DESCRIPTION
man
man/buildModelMatrix.Rd
man/REquantile.Rd
man/mkNewReTrms.Rd
man/reOnly.Rd
man/hsb.Rd
man/REsim.Rd
man/RHSForm.Rd
man/shinyMer.Rd
man/stripAttributes.Rd
man/averageObs.Rd
man/expectedRank.Rd
man/formulaBuild.Rd
man/modelFixedEff.Rd
man/levelfun.Rd
man/thetaExtract.Rd
man/print.merModList.Rd
man/RMSE.merMod.Rd
man/plotREsim.Rd
man/modelInfo.Rd
man/subBoot.Rd
man/modelRandEffStats.Rd
man/randomObs.Rd
man/subsetList.Rd
man/draw.Rd
man/merModList.Rd
man/VarCorr.merModList.Rd
man/collapseFrame.Rd
man/predictInterval.Rd
man/wiggle.Rd
man/REsdExtract.Rd
man/REimpact.Rd
man/FEsim.Rd
man/reTermCount.Rd
man/findFormFuns.Rd
man/merTools.Rd
man/plotFEsim.Rd
man/sanitizeNames.Rd
man/setup_parallel.Rd
man/fastdisp.Rd
man/REextract.Rd
man/REcorrExtract.Rd
man/reTermNames.Rd
man/superFactor.Rd
man/ICC.Rd
man/shuffle.Rd
merTools documentation built on May 19, 2017, 4:48 p.m.

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