abbr | Abbreviate GO term description |
addReactFixed | A fixed version of sybil::addReact |
area | Compute area between two curves |
bestRanking | Identify the best ranking |
diagnosticTolerance | Compute appropriate tolerance for the given model |
exprMaguire | Gene expression from Maguire et al. RNA-seq data |
fitness | Fitness of gene removal-based submodels with different gene... |
generic | Relax model external source |
iMK735 | iMK735 metabolic models in hypoxia and normoxia |
maxArea | Compute maxium area between curves |
metaboGSE | Gene set enrichment analysis |
parseBooleanCopy | Copy of sybil:::.parseBoolean |
pwDesc | Description of gene set IDs |
relativeExpr | Relative expression data (log2 counts) |
rescue | Rescue a model |
rescueDist | Compute distances of rescue reactions |
rmGenes | Generate a submodel by removing genes |
scoreGeneDel | Structure of Class "scoreGeneDel" |
simulateSubmnet | Plot fitness of submodels built by gene removal in a... |
submnet | Simulation of gene removal-based submodel series with a given... |
weightReacts | Compute weights of rescue reactions |
yarli2GO | GO annotation retrieved from Uniprot |
yarliGSE | Gene set enrichment example for Yarrowia lipolytica |
yarliSubmnets | Submodel construction example for Yarrowia lipolytica |
zscoreExpr | Z-score of expression data |
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