Man pages for metaboGSE
Gene Set Enrichment Analysis via Integration of Metabolic Networks and RNA-Seq Data
| abbr | Abbreviate GO term description |
| addReactFixed | A fixed version of sybil::addReact |
| area | Compute area between two curves |
| bestRanking | Identify the best ranking |
| diagnosticTolerance | Compute appropriate tolerance for the given model |
| exprMaguire | Gene expression from Maguire et al. RNA-seq data |
| fitness | Fitness of gene removal-based submodels with different gene... |
| generic | Relax model external source |
| iMK735 | iMK735 metabolic models in hypoxia and normoxia |
| maxArea | Compute maxium area between curves |
| metaboGSE | Gene set enrichment analysis |
| parseBooleanCopy | Copy of sybil:::.parseBoolean |
| pwDesc | Description of gene set IDs |
| relativeExpr | Relative expression data (log2 counts) |
| rescue | Rescue a model |
| rescueDist | Compute distances of rescue reactions |
| rmGenes | Generate a submodel by removing genes |
| scoreGeneDel | Structure of Class "scoreGeneDel" |
| simulateSubmnet | Plot fitness of submodels built by gene removal in a... |
| submnet | Simulation of gene removal-based submodel series with a given... |
| weightReacts | Compute weights of rescue reactions |
| yarli2GO | GO annotation retrieved from Uniprot |
| yarliGSE | Gene set enrichment example for Yarrowia lipolytica |
| yarliSubmnets | Submodel construction example for Yarrowia lipolytica |
| zscoreExpr | Z-score of expression data |
