diagnosticTolerance: Compute appropriate tolerance for the given model

In metaboGSE: Gene Set Enrichment Analysis via Integration of Metabolic Networks and RNA-Seq Data

Description

The function computes a tolerance value which is appropriate to a model. This is an empirical procedure whose results must be considered with caution.

Usage

diagnosticTolerance(
  model,
  mc.cores = 2,
  solver = SYBIL_SETTINGS("SOLVER"),
  method = SYBIL_SETTINGS("METHOD")
)

Arguments

model	An object of class modelorg.
mc.cores	The number of cores to use (at least 2), i.e. at most how many child processes will be run simultaneously. Default: 2.
solver	A character indicating the solver to be used in sybil. Default: SYBIL_SETTINGS("SOLVER").
method	A character indicating the method to be used in sybil. Default: SYBIL_SETTINGS("METHOD").

Value

Tolerance

metaboGSE documentation built on Oct. 23, 2020, 8:14 p.m.