get_data_frame: Get data in a taxonomy or taxmap object by name

In metacoder: Tools for Parsing, Manipulating, and Graphing Taxonomic Abundance Data

Get data in a taxonomy or taxmap object by name

Description

Given a vector of names, return a table of the indicated data contained in a [taxonomy()] or [taxmap()] object.

obj$get_data_frame(name = NULL, ...)
get_data_frame(obj, name = NULL, ...)

Arguments

obj	A [taxonomy()] or [taxmap()] object
name	('character') Names of data to return. If not supplied, return all data listed in [all_names()].
...	Passed to [all_names()]. Used to filter what kind of data is returned (e.g. columns in tables or function output?) if 'name' is not supplied or what kinds are allowed if 'name' is supplied.

Details

Note: This function will not work with variables in datasets in [taxmap()] objects unless their rows correspond 1:1 with all taxa.

Value

'data.frame'

Examples

# Get specific values
get_data_frame(ex_taxmap, c("taxon_names", "taxon_indexes", "is_stem"))

metacoder documentation built on April 4, 2023, 9:08 a.m.