get_taxmap_other_cols: Parse the other_cols option

In metacoder: Tools for Parsing, Manipulating, and Graphing Taxonomic Abundance Data

Parse the other_cols option

Description

Parse the other_cols option used in many calculation functions.

Usage

get_taxmap_other_cols(obj, data, cols, other_cols = NULL)

Arguments

obj	A taxmap object
data	The name of a table in obj that contains counts.
cols	The names/indexes of columns in data to use. Takes one of the following inputs: TRUE/FALSE: All columns will used. Vector of TRUE/FALSE of length equal to the number of columns: Use the columns corresponding to TRUE values. Character vector: The names of columns to use Numeric vector: The indexes of columns to use
other_cols	Preserve in the output non-target columns present in the input data. The "taxon_id" column will always be preserved. Takes one of the following inputs: TRUE/FALSE: All non-target columns will be preserved or not. Vector of TRUE/FALSE of length equal to the number of columns: Preserve the columns corresponding to TRUE values. Character vector: The names of columns to preserve Numeric vector: The indexes of columns to preserve

See Also

Other option parsers: get_taxmap_cols(), get_taxmap_data(), get_taxmap_table(), verify_taxmap()

metacoder documentation built on April 3, 2025, 8:39 p.m.