hmp_samples: Sample information for HMP subset

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Sample information for HMP subset

Description

The sample information for a subset of the Human Microbiome Project data. It contains the sample ID, sex, and body site for each sample in the abundance matrix stored in hmp_otus. The "sample_id" column corresponds to the column names of hmp_otus.

Format

A 50 x 3 tibble.

Details

The 50 samples were randomly selected such that there were 10 in each of 5 treatments: "Saliva", "Throat", "Stool", "Right_Antecubital_fossa", "Anterior_nares". For each treatment, there were 5 samples from men and 5 from women. "Right_Antecubital_fossa" was renamed to "Skin" and "Anterior_nares" to "Nose".

Source

Subset from data available at https://www.hmpdacc.org/hmp/HMQCP/

See Also

Other hmp_data: hmp_otus

metacoder documentation built on April 4, 2023, 9:08 a.m.