id_classifications: Get ID classifications of taxa

In metacoder: Tools for Parsing, Manipulating, and Graphing Taxonomic Abundance Data

Get ID classifications of taxa

Description

Get classification strings of taxa in an object of type [taxonomy()] or [taxmap()] composed of taxon IDs. Each classification is constructed by concatenating the taxon ids of the given taxon and its supertaxa.

obj$id_classifications(sep = ";")
id_classifications(obj, sep = ";")

Arguments

obj	([taxonomy()] or [taxmap()])
sep	('character' of length 1) The character(s) to place between taxon IDs

Value

'character'

See Also

Other taxonomy data functions: classifications(), is_branch(), is_internode(), is_leaf(), is_root(), is_stem(), map_data_(), map_data(), n_leaves_1(), n_leaves(), n_subtaxa_1(), n_subtaxa(), n_supertaxa_1(), n_supertaxa(), taxon_ids(), taxon_indexes(), taxon_names(), taxon_ranks()

Examples

# Get classifications of IDs for each taxon
id_classifications(ex_taxmap)

# Use a different seperator
id_classifications(ex_taxmap, sep = '|')

metacoder documentation built on April 4, 2023, 9:08 a.m.