n_subtaxa_1: Get number of subtaxa

In metacoder: Tools for Parsing, Manipulating, and Graphing Taxonomic Abundance Data

Get number of subtaxa

Description

Get number of subtaxa for each taxon in an object of type [taxonomy()] or [taxmap()], not including subtaxa of subtaxa etc. This does not include subtaxa assigned to subtaxa.

obj$n_subtaxa_1()
n_subtaxa_1(obj)

Arguments

obj	([taxonomy()] or [taxmap()])

Value

numeric

See Also

Other taxonomy data functions: classifications(), id_classifications(), is_branch(), is_internode(), is_leaf(), is_root(), is_stem(), map_data_(), map_data(), n_leaves_1(), n_leaves(), n_subtaxa(), n_supertaxa_1(), n_supertaxa(), taxon_ids(), taxon_indexes(), taxon_names(), taxon_ranks()

Examples

# Count number of immediate subtaxa in each taxon
n_subtaxa_1(ex_taxmap)

# Filter taxa based on number of subtaxa
#  (this command removed all leaves or "tips" of the tree)
filter_taxa(ex_taxmap, n_subtaxa_1 > 0)

metacoder documentation built on April 4, 2023, 9:08 a.m.