parse_dataset: Parse options specifying datasets

In metacoder: Tools for Parsing, Manipulating, and Graphing Taxonomic Abundance Data

Parse options specifying datasets

Description

Parse options specifying datasets in taxmap objects

Usage

parse_dataset(obj, data, must_be_valid = TRUE, needed = TRUE, rm_na = TRUE)

Arguments

obj	The taxmap object.
data	The name/index of datasets in a taxmap object to use. Can also be a logical vector of length equal to the number of datasets.
must_be_valid	If TRUE, all datasets specified must be valid or an error occurs.
needed	If TRUE, at least one dataset must be specified or an error occurs.
rm_na	If TRUE, then invalid datasets do result in NAs in the output.

Value

The indexes for the datasets selected

metacoder documentation built on April 4, 2023, 9:08 a.m.