parse_newick: Parse a Newick file

In metacoder: Tools for Parsing, Manipulating, and Graphing Taxonomic Abundance Data

Parse a Newick file

Description

Parse a Newick file into a taxmap object.

Usage

parse_newick(file = NULL, text = NULL)

Arguments

file	(character of length 1) The file path to the input file. Either file or text must be supplied but not both.
text	(character of length 1) The raw text to parse. Either file or text must be supplied but not both.

Details

The input file has a format like:

(ant:17, (bat:31, cow:22):7, dog:22, (elk:33, fox:12):40);
(dog:20, (elephant:30, horse:60):20):50;

Value

taxmap

See Also

Other parsers: extract_tax_data(), lookup_tax_data(), parse_dada2(), parse_edge_list(), parse_greengenes(), parse_mothur_tax_summary(), parse_mothur_taxonomy(), parse_phyloseq(), parse_phylo(), parse_qiime_biom(), parse_rdp(), parse_silva_fasta(), parse_tax_data(), parse_ubiome(), parse_unite_general()

metacoder documentation built on April 4, 2023, 9:08 a.m.