replace_taxon_ids: Replace taxon ids

In metacoder: Tools for Parsing, Manipulating, and Graphing Taxonomic Abundance Data

Replace taxon ids

Description

Replace taxon ids in a [taxmap()] or [taxonomy()] object.

obj$replace_taxon_ids(new_ids)
replace_taxon_ids(obj, new_ids)

Arguments

obj	The [taxonomy()] or [taxmap()] object.
new_ids	A vector of new ids, one per taxon. They must be unique and in the same order as the corresponding ids in 'obj$taxon_ids()'.

Value

A [taxonomy()] or [taxmap()] object with new taxon ids

Examples

# Replace taxon IDs with numbers
replace_taxon_ids(ex_taxmap, seq_len(length(ex_taxmap$taxa)))

# Make taxon IDs capital letters
replace_taxon_ids(ex_taxmap, toupper(taxon_ids(ex_taxmap)))

metacoder documentation built on April 4, 2023, 9:08 a.m.