taxon_ranks: Get taxon ranks

In metacoder: Tools for Parsing, Manipulating, and Graphing Taxonomic Abundance Data

Get taxon ranks

Description

Return the taxon ranks in a [taxonomy()] or [taxmap()] object. They are in the order taxa appear in the edge list.

obj$taxon_ranks()
taxon_ranks(obj)

Arguments

obj	The [taxonomy()] or [taxmap()] object.

See Also

Other taxonomy data functions: classifications(), id_classifications(), is_branch(), is_internode(), is_leaf(), is_root(), is_stem(), map_data_(), map_data(), n_leaves_1(), n_leaves(), n_subtaxa_1(), n_subtaxa(), n_supertaxa_1(), n_supertaxa(), taxon_ids(), taxon_indexes(), taxon_names()

Examples

# Get ranks for each taxon
taxon_ranks(ex_taxmap)

# Filter by rank
filter_taxa(ex_taxmap, taxon_ranks == "family", supertaxa = TRUE)

metacoder documentation built on April 4, 2023, 9:08 a.m.