transmute_obs: Replace columns in [taxmap()] objects

In metacoder: Tools for Parsing, Manipulating, and Graphing Taxonomic Abundance Data

Replace columns in [taxmap()] objects

Description

Replace columns of tables in 'obj$data' in [taxmap()] objects. See [dplyr::transmute()] for the inspiration for this function and more information. Calling the function using the 'obj$transmute_obs(...)' style edits "obj" in place, unlike most R functions. However, calling the function using the ‘transmute_obs(obj, ...)' imitates R’s traditional copy-on-modify semantics, so "obj" would not be changed; instead a changed version would be returned, like most R functions.

obj$transmute_obs(data, ...)
transmute_obs(obj, data, ...)

Arguments

obj	An object of type [taxmap()]
data	Dataset name, index, or a logical vector that indicates which dataset in 'obj$data' to use.
...	One or more named columns to add. Newly created columns can be referenced in the same function call. Any variable name that appears in [all_names()] can be used as if it was a vector on its own.
target	DEPRECIATED. use "data" instead.

Value

An object of type [taxmap()]

See Also

Other taxmap manipulation functions: arrange_obs(), arrange_taxa(), filter_obs(), filter_taxa(), mutate_obs(), sample_frac_obs(), sample_frac_taxa(), sample_n_obs(), sample_n_taxa(), select_obs()

Examples

# Replace columns in a table with new columns
transmute_obs(ex_taxmap, "info", new_col = paste0(name, "!!!"))

metacoder documentation built on April 4, 2023, 9:08 a.m.